Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Annotation Matrix

Click or enter search terms to filter the experiments included in the matrix.

Annotation type
  • 28candidate regulatory elements
  • 19target gene predictions
  • 12binding sites
  • 7accessible chromatin
  • 5histone modifications
  • 1chromatin state
  • 1variant allelic effects
Date released
  • 28February, 2021
  • 28September, 2022
  • 6November, 2021
  • 4June, 2020
  • 3October, 2022
  • 2May, 2021
  • 1August, 2017
  • 1February, 2024
Available data
  • 73bed bed3+
  • 14bed bed9
  • 3bigWig
Organism
  • 73Homo sapiens
Collection Tags
  • 28EpiMap
  • 18ChIP-Atlas
  • 17ENCODE
  • 6AMP
  • 6T2DKP
  • 3DGA
Biosample type
  • 39primary cell
  • 29cell line
  • 3in vitro differentiated cells
  • 2tissue
Organ
  • 557epithelium
  • 347connective tissue
  • 326brain
  • 311kidney
  • 284musculature of body
  • 240lung
  • 231intestine
  • 192bodily fluid
  • 183blood
  • 178embryo
  • 178heart
  • 177limb
  • 171pancreas
  • 169vasculature
  • 168skin of body
  • 139large intestine
  • 126blood vessel
  • 113extraembryonic component
  • 108liver
  • 99eye
  • 94stomach
  • 77uterus
  • 73mammary gland
  • 70bone element
  • 65small intestine
  • 64prostate gland
  • 58adrenal gland
  • 57placenta
  • 55adipose tissue
  • 54lymph node
  • 54penis
  • 51ureter
  • 49artery
  • 40gonad
  • 38thymus
  • 36esophagus
  • 30spinal cord
  • 27spleen
  • 21testis
  • 18lymphoid tissue
  • 18ovary
  • 18thyroid gland
  • 17lymphatic vessel
  • 17vein
  • 15nerve
  • 15skeleton
  • 14bronchus
  • 14mouth
  • 12pituitary gland
  • 11bone marrow
  • 10breast
  • 7tongue
  • 7urinary bladder
  • 7vagina
  • 5trachea
  • 3nose
Project
  • 67AMP
  • 6ENCODE
Genome assembly (visualization)
  • 73hg19
  • 6GRCh38
BIOSAMPLE
TYPE

73 results

search-icontable-tab-icon
Clear Filters
candidate regulatory elements
target gene predictions
binding sites
accessible chromatin
histone modifications
chromatin state
variant allelic effects
primary cell
mammary epithelial cell31411
mammary gland epithelial cell34111
fibroblast of mammary gland21211
luminal epithelial cell of mammary gland132
myoepithelial cell of mammary gland42
cell line
MCF-796312
T47D32
MCF 10A3
in vitro differentiated cells
mammary gland epithelial cell111
tissue
mammary gland11
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego