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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 21ChIP-seq
  • 7DNase-seq
  • 1Hi-C
Assay category
  • 21DNA binding
  • 7DNA accessibility
  • 13D chromatin structure
Target of assay
  • 12histone
  • 12histone modification
  • 7transcription factor
  • 6broad histone mark
  • 6narrow histone mark
  • 2RNA binding protein
  • 2control
Date released
  • 19August, 2017
  • 4June, 2019
  • 2November, 2018
  • 2October, 2019
  • 2September, 2017
Available data
  • 689bam
  • 623bigWig
  • 471fastq
  • 417tsv
  • 214bed narrowPeak
  • 91bigBed narrowPeak
  • 80zippedFastqFolder
  • 29bed bed3+
  • 21bed broadPeak
  • 19tagAlign
  • 7bedpe bed3+
  • 7bigBed broadPeak
  • 7hic
  • 6bed bedMethyl
  • 6bigBed bedMethyl
  • 6txt
  • 3cool
  • 1bedpe
  • 1hdf5
Organism
  • 29Homo sapiens
Biosample type
  • 27tissue
  • 2cell line
Organ
  • 78kidney
  • 36limb
  • 35brain
  • 34musculature of body
  • 30heart
  • 29pancreas
  • 27connective tissue
  • 21epithelium
  • 18ureter
  • 13liver
  • 13vasculature
  • 11blood vessel
  • 6adipose tissue
  • 4artery
  • 4eye
  • 3embryo
  • 2nerve
  • 2vein
  • 1spleen
Project
  • 29AMP
Genome assembly (visualization)
  • 29GRCh38
  • 27hg19
Lab
  • 29AMP-T2D consortium
Audit category:
  • 10missing controlled_by
Audit category:
  • 1inconsistent assembly
BIOSAMPLE
ASSAY

29 results

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Clear Filters
ChIP-seq
DNase-seq
Hi-C
tissue
islet of Langerhans21
body of pancreas4
pancreas2
cell line
Panc111
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