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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 11DNase-seq
  • 2Hi-C
Assay category
  • 11DNA accessibility
  • 23D chromatin structure
Date released
  • 7June, 2019
  • 4October, 2019
  • 2July, 2019
Available data
  • 185bam
  • 155bigWig
  • 133bed narrowPeak
  • 83bigBed narrowPeak
  • 68tsv
  • 17bed broadPeak
  • 17bigBed broadPeak
  • 13bed bed3+
  • 6fastq
  • 6tagAlign
  • 3hic
  • 2bed bedMethyl
  • 2bedpe bed3+
  • 2bigBed bedMethyl
  • 2hdf5
  • 1tar
Organism
  • 13Homo sapiens
Biosample type
  • 8primary cell
  • 5tissue
Organ
  • 78kidney
  • 36limb
  • 35brain
  • 34musculature of body
  • 30heart
  • 29pancreas
  • 27connective tissue
  • 21epithelium
  • 18ureter
  • 13liver
  • 13vasculature
  • 11blood vessel
  • 6adipose tissue
  • 4artery
  • 4eye
  • 3embryo
  • 2nerve
  • 2vein
  • 1spleen
Project
  • 13AMP
Genome assembly (visualization)
  • 12hg19
  • 11GRCh38
Lab
  • 13AMP-T2D consortium
Audit category:
  • 1inconsistent ontology term
BIOSAMPLE
ASSAY

13 results

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DNase-seq
Hi-C
primary cell
brain microvascular endothelial cell11
endothelial cell of umbilical vein2
choroid plexus epithelial cell1
endothelial cell of hepatic sinusoid1
kidney capillary endothelial cell1
tissue
coronary artery2
tibial artery2
ascending aorta1
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