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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 180DNase-seq
  • 16ChIP-seq
  • 5Hi-C
  • 2total RNA-seq
  • 1ATAC-seq
  • 1pCHi-C
Assay category
  • 181DNA accessibility
  • 16DNA binding
  • 53D chromatin structure
  • 2Transcription
Target of assay
  • 10histone
  • 10histone modification
  • 5broad histone mark
  • 5control
  • 5narrow histone mark
  • 1RNA binding protein
  • 1transcription factor
Date released
  • 164June, 2019
  • 15December, 2017
  • 8November, 2018
  • 8October, 2019
  • 4July, 2019
  • 2May, 2021
  • 1August, 2017
  • 1February, 2021
  • 1February, 2023
  • 1November, 2020
Available data
  • 2909bam
  • 2702bigWig
  • 1644bed narrowPeak
  • 1298tsv
  • 1229fastq
  • 1002bigBed narrowPeak
  • 296bed broadPeak
  • 282tagAlign
  • 261bigBed broadPeak
  • 205bed bed3+
  • 156txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 16bedpe bed3+
  • 15hic
  • 7bed bedgraph
  • 6bed bed3
  • 6csv
  • 5hdf5
  • 4tar
  • 2ibed
  • 1vcf
Organism
  • 205Homo sapiens
Biosample type
  • 156tissue
  • 30primary cell
  • 13in vitro differentiated cells
  • 3cell line
  • 3stem cell
Organ
  • 73kidney
  • 36limb
  • 33musculature of body
  • 26brain
  • 23heart
  • 18ureter
  • 16epithelium
  • 13vasculature
  • 11blood vessel
  • 9connective tissue
  • 9pancreas
  • 6liver
  • 4artery
  • 3embryo
  • 2adipose tissue
  • 2eye
  • 2nerve
  • 2vein
  • 1spleen
Project
  • 205AMP
Genome assembly (visualization)
  • 197GRCh38
  • 192hg19
Lab
  • 203AMP-T2D consortium
  • 2Kyle Gaulton, UCSD
Audit category:
  • 5inconsistent ontology term
Audit category:
  • 6inconsistent control read length
  • 1inconsistent assembly
replication_type!
  • anisogenic
BIOSAMPLE
ASSAY

205 results

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Clear Filters
DNase-seq
ChIP-seq
Hi-C
total RNA-seq
ATAC-seq
pCHi-C
tissue
muscle of arm17
heart14
muscle of leg13
brain12
kidney11
primary cell
CD8-positive, alpha-beta T cell2
astrocyte of the cerebellum11
brain microvascular endothelial cell11
brain pericyte11
cardiac fibroblast2
in vitro differentiated cells
Posterior foregut3
definitive endodermal cell3
pancreatic endoderm3
primitive gut cell3
immature adipocyte1
cell line
Panc111
HepG21
stem cell
hESC3
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