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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
186
DNase-seq
38
ChIP-seq
4
ATAC-seq
2
Capture-C
2
snATAC-seq
2
total RNA-seq
1
pCHi-C
Assay category
192
DNA accessibility
38
DNA binding
2
Transcription
Target of assay
19
transcription factor
15
histone
15
histone modification
8
narrow histone mark
7
broad histone mark
4
control
2
RNA binding protein
Date released
171
June, 2019
33
August, 2017
9
November, 2018
5
August, 2021
5
October, 2019
4
February, 2023
2
May, 2021
2
September, 2017
1
February, 2021
1
July, 2025
1
May, 2022
1
November, 2020
Available data
2716
bam
2558
bigWig
1532
tsv
1262
bed narrowPeak
857
fastq
553
bigBed narrowPeak
372
tagAlign
235
bed bed3+
223
bed broadPeak
186
bigBed broadPeak
158
txt
153
zippedFastqFolder
64
xls
19
hic
17
bedpe bed3+
16
bed bedMethyl
16
bigBed bedMethyl
11
bed bed3
8
csv
3
cool
1
bedpe
1
tagAlign bed3+
1
tbi
1
vcf
Organism
234
Homo sapiens
Biosample type
205
tissue
17
primary cell
13
in vitro differentiated cells
Organ
72
kidney
36
limb
35
musculature of body
28
heart
27
brain
27
pancreas
24
connective tissue
18
ureter
11
liver
9
epithelium
7
blood vessel
7
vasculature
6
adipose tissue
4
artery
3
eye
2
nerve
1
spleen
1
vein
Project
235
AMP
Genome assembly (visualization)
225
GRCh38
214
hg19
Lab
230
AMP-T2D consortium
2
Kyle Gaulton, UCSD
2
Struan F.A. Grant, CHOP
1
Stephen Parker, UMich
Audit category:
3
inconsistent ontology term
1
audit script error
Audit category:
14
missing controlled_by
Audit category:
4
inconsistent control read length
replication_type!
isogenic
BIOSAMPLE
ASSAY
235 results
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DNase-seq
ChIP-seq
ATAC-seq
Capture-C
snATAC-seq
total RNA-seq
pCHi-C
tissue
islet of Langerhans
21
heart
18
muscle of arm
17
brain
14
kidney
13
+ See 41 more…
primary cell
hepatocyte
1
3
CD8-positive, alpha-beta T cell
2
kidney tubule cell
2
osteoblast
1
1
brain pericyte
1
+ See 6 more…
in vitro differentiated cells
adipocyte
7
1
1
immature adipocyte
2
osteoblast
1
preadipocyte
1
See all biosamples
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