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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 186DNase-seq
  • 38ChIP-seq
  • 4ATAC-seq
  • 2Capture-C
  • 2total RNA-seq
  • 1pCHi-C
  • 1snATAC-seq
Assay category
  • 191DNA accessibility
  • 38DNA binding
  • 2Transcription
Target of assay
  • 19transcription factor
  • 15histone
  • 15histone modification
  • 8narrow histone mark
  • 7broad histone mark
  • 4control
  • 2RNA binding protein
Date released
  • 171June, 2019
  • 33August, 2017
  • 9November, 2018
  • 5August, 2021
  • 5October, 2019
  • 4February, 2023
  • 2May, 2021
  • 2September, 2017
  • 1February, 2021
  • 1May, 2022
  • 1November, 2020
Available data
  • 2716bam
  • 2558bigWig
  • 1531tsv
  • 1262bed narrowPeak
  • 857fastq
  • 553bigBed narrowPeak
  • 372tagAlign
  • 234bed bed3+
  • 223bed broadPeak
  • 186bigBed broadPeak
  • 158txt
  • 153zippedFastqFolder
  • 64xls
  • 19hic
  • 17bedpe bed3+
  • 16bed bedMethyl
  • 16bigBed bedMethyl
  • 11bed bed3
  • 8csv
  • 3cool
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 234Homo sapiens
Biosample type
  • 204tissue
  • 17primary cell
  • 13in vitro differentiated cells
Organ
  • 72kidney
  • 36limb
  • 34musculature of body
  • 28heart
  • 27brain
  • 27pancreas
  • 24connective tissue
  • 18ureter
  • 11liver
  • 9epithelium
  • 7blood vessel
  • 7vasculature
  • 6adipose tissue
  • 4artery
  • 3eye
  • 2nerve
  • 1spleen
  • 1vein
Project
  • 234AMP
Genome assembly (visualization)
  • 224GRCh38
  • 214hg19
Lab
  • 230AMP-T2D consortium
  • 2Kyle Gaulton, UCSD
  • 2Struan F.A. Grant, CHOP
Audit category:
  • 3inconsistent ontology term
  • 1audit script error
Audit category:
  • 14missing controlled_by
Audit category:
  • 4inconsistent control read length
replication_type!
  • isogenic
BIOSAMPLE
ASSAY

234 results

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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
Capture-C
total RNA-seq
pCHi-C
snATAC-seq
tissue
islet of Langerhans21
heart18
muscle of arm17
brain14
kidney13
primary cell
hepatocyte13
CD8-positive, alpha-beta T cell2
kidney tubule cell2
osteoblast11
brain pericyte1
in vitro differentiated cells
adipocyte711
immature adipocyte2
osteoblast1
preadipocyte1
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