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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 52ChIP-seq
  • 42DNase-seq
  • 5Hi-C
  • 3ATAC-seq
  • 2Capture-C
  • 2pCHi-C
  • 1snATAC-seq
Assay category
  • 52DNA binding
  • 46DNA accessibility
  • 53D chromatin structure
Target of assay
  • 25histone
  • 25histone modification
  • 18transcription factor
  • 13narrow histone mark
  • 12broad histone mark
  • 9control
  • 1RNA binding protein
Date released
  • 39June, 2019
  • 32August, 2017
  • 15December, 2017
  • 5August, 2021
  • 4July, 2019
  • 3February, 2023
  • 3October, 2019
  • 2February, 2021
  • 2September, 2017
  • 1May, 2022
  • 1November, 2018
Available data
  • 1159bam
  • 1078bigWig
  • 728bed narrowPeak
  • 630fastq
  • 529bigBed narrowPeak
  • 371tsv
  • 142tagAlign
  • 125bed broadPeak
  • 123bigBed broadPeak
  • 107bed bed3+
  • 20bed bedMethyl
  • 20bigBed bedMethyl
  • 13bedpe bed3+
  • 12hic
  • 8txt
  • 7bed bed3
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2csv
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
Organism
  • 107Homo sapiens
Biosample type
  • 50tissue
  • 27primary cell
  • 24in vitro differentiated cells
  • 3cell line
  • 3stem cell
Organ
  • 22pancreas
  • 21connective tissue
  • 17brain
  • 17epithelium
  • 11kidney
  • 9heart
  • 9liver
  • 6vasculature
  • 4adipose tissue
  • 4blood vessel
  • 3embryo
  • 3eye
  • 1musculature of body
  • 1vein
Project
  • 107AMP
Genome assembly (visualization)
  • 95GRCh38
  • 94hg19
Lab
  • 105AMP-T2D consortium
  • 2Struan F.A. Grant, CHOP
Audit category:
  • 4inconsistent ontology term
  • 1audit script error
Audit category:
  • 14missing controlled_by
Audit category:
  • 10inconsistent control read length
  • 1inconsistent assembly
replication_type!
  • unreplicated
BIOSAMPLE
ASSAY

107 results

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Clear Filters
ChIP-seq
DNase-seq
Hi-C
ATAC-seq
Capture-C
pCHi-C
snATAC-seq
tissue
islet of Langerhans20
heart4
liver31
white adipose tissue4
brain2
primary cell
cardiac fibroblast3
hepatocyte3
astrocyte of the cerebellum11
brain microvascular endothelial cell11
glomerular visceral epithelial cell2
in vitro differentiated cells
adipocyte711
Posterior foregut3
definitive endodermal cell3
pancreatic endoderm3
primitive gut cell3
cell line
Panc111
HepG21
stem cell
hESC3
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