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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
37
ChIP-seq
24
DNase-seq
3
ATAC-seq
2
Capture-C
1
pCHi-C
1
snATAC-seq
Assay category
37
DNA binding
28
DNA accessibility
Target of assay
18
transcription factor
15
histone
15
histone modification
8
narrow histone mark
7
broad histone mark
4
control
1
RNA binding protein
Date released
32
August, 2017
23
June, 2019
5
August, 2021
3
February, 2023
2
September, 2017
1
February, 2021
1
May, 2022
1
November, 2018
Available data
483
bam
467
bigWig
302
tsv
173
bed narrowPeak
129
fastq
116
tagAlign
68
bed bed3+
40
bigBed narrowPeak
26
bed broadPeak
24
bigBed broadPeak
8
hic
7
bedpe bed3+
6
bed bed3
5
txt
3
cool
2
csv
1
bedpe
1
tagAlign bed3+
Organism
68
Homo sapiens
Biosample type
49
tissue
12
in vitro differentiated cells
7
primary cell
Organ
20
pancreas
18
connective tissue
9
brain
7
heart
7
liver
5
epithelium
5
kidney
4
adipose tissue
2
eye
1
musculature of body
Project
68
AMP
Genome assembly (visualization)
61
GRCh38
58
hg19
Lab
66
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
1
audit script error
1
inconsistent ontology term
Audit category:
14
missing controlled_by
Audit category:
4
inconsistent control read length
BIOSAMPLE
ASSAY
68 results
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ChIP-seq
DNase-seq
ATAC-seq
Capture-C
pCHi-C
snATAC-seq
tissue
islet of Langerhans
20
heart
4
liver
3
1
white adipose tissue
4
brain
2
+ See 12 more…
in vitro differentiated cells
adipocyte
7
1
1
immature adipocyte
1
osteoblast
1
preadipocyte
1
primary cell
hepatocyte
3
cardiac fibroblast
1
kidney glomerular epithelial cell
1
kidney tubule cell
1
osteoblast
1
See all biosamples
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