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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 37ChIP-seq
  • 24DNase-seq
  • 3ATAC-seq
  • 2Capture-C
  • 1pCHi-C
  • 1snATAC-seq
Assay category
  • 37DNA binding
  • 28DNA accessibility
Target of assay
  • 18transcription factor
  • 15histone
  • 15histone modification
  • 8narrow histone mark
  • 7broad histone mark
  • 4control
  • 1RNA binding protein
Date released
  • 32August, 2017
  • 23June, 2019
  • 5August, 2021
  • 3February, 2023
  • 2September, 2017
  • 1February, 2021
  • 1May, 2022
  • 1November, 2018
Available data
  • 483bam
  • 467bigWig
  • 302tsv
  • 173bed narrowPeak
  • 129fastq
  • 116tagAlign
  • 68bed bed3+
  • 40bigBed narrowPeak
  • 26bed broadPeak
  • 24bigBed broadPeak
  • 8hic
  • 7bedpe bed3+
  • 6bed bed3
  • 5txt
  • 3cool
  • 2csv
  • 1bedpe
  • 1tagAlign bed3+
Organism
  • 68Homo sapiens
Biosample type
  • 49tissue
  • 12in vitro differentiated cells
  • 7primary cell
Organ
  • 20pancreas
  • 18connective tissue
  • 9brain
  • 7heart
  • 7liver
  • 5epithelium
  • 5kidney
  • 4adipose tissue
  • 2eye
  • 1musculature of body
Project
  • 68AMP
Genome assembly (visualization)
  • 61GRCh38
  • 58hg19
Lab
  • 66AMP-T2D consortium
  • 2Struan F.A. Grant, CHOP
Audit category:
  • 1audit script error
  • 1inconsistent ontology term
Audit category:
  • 14missing controlled_by
Audit category:
  • 4inconsistent control read length
BIOSAMPLE
ASSAY

68 results

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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
Capture-C
pCHi-C
snATAC-seq
tissue
islet of Langerhans20
heart4
liver31
white adipose tissue4
brain2
in vitro differentiated cells
adipocyte711
immature adipocyte1
osteoblast1
preadipocyte1
primary cell
hepatocyte3
cardiac fibroblast1
kidney glomerular epithelial cell1
kidney tubule cell1
osteoblast1
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