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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 18DNase-seq
  • 15ChIP-seq
  • 5Hi-C
  • 1pCHi-C
Assay category
  • 18DNA accessibility
  • 15DNA binding
  • 53D chromatin structure
Target of assay
  • 10histone
  • 10histone modification
  • 5broad histone mark
  • 5control
  • 5narrow histone mark
Date released
  • 16June, 2019
  • 15December, 2017
  • 4July, 2019
  • 3October, 2019
  • 1February, 2021
Available data
  • 676bam
  • 611bigWig
  • 555bed narrowPeak
  • 501fastq
  • 489bigBed narrowPeak
  • 99bed broadPeak
  • 99bigBed broadPeak
  • 69tsv
  • 39bed bed3+
  • 26tagAlign
  • 20bed bedMethyl
  • 20bigBed bedMethyl
  • 7bed bedgraph
  • 6bedpe bed3+
  • 5hdf5
  • 4hic
  • 4tar
  • 3txt
  • 2ibed
  • 1bed bed3
Organism
  • 39Homo sapiens
Biosample type
  • 20primary cell
  • 12in vitro differentiated cells
  • 3cell line
  • 3stem cell
  • 1tissue
Organ
  • 12epithelium
  • 8brain
  • 6kidney
  • 6vasculature
  • 4blood vessel
  • 3connective tissue
  • 3embryo
  • 2heart
  • 2liver
  • 2pancreas
  • 1eye
  • 1vein
Project
  • 39AMP
Genome assembly (visualization)
  • 36hg19
  • 34GRCh38
Lab
  • 39AMP-T2D consortium
Audit category:
  • 3inconsistent ontology term
Audit category:
  • 6inconsistent control read length
  • 1inconsistent assembly
BIOSAMPLE
ASSAY

39 results

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Clear Filters
DNase-seq
ChIP-seq
Hi-C
pCHi-C
primary cell
astrocyte of the cerebellum11
brain microvascular endothelial cell11
cardiac fibroblast2
glomerular visceral epithelial cell2
astrocyte of the hippocampus1
in vitro differentiated cells
Posterior foregut3
definitive endodermal cell3
pancreatic endoderm3
primitive gut cell3
cell line
Panc111
HepG21
stem cell
hESC3
tissue
middle frontal gyrus1
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