Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 162DNase-seq
  • 2total RNA-seq
  • 1ATAC-seq
  • 1ChIP-seq
Assay category
  • 163DNA accessibility
  • 2Transcription
  • 1DNA binding
Target of assay
  • 1RNA binding protein
  • 1transcription factor
Date released
  • 148June, 2019
  • 8November, 2018
  • 5October, 2019
  • 2May, 2021
  • 1August, 2017
  • 1February, 2023
  • 1November, 2020
Available data
  • 2233bam
  • 2091bigWig
  • 1229tsv
  • 1089bed narrowPeak
  • 728fastq
  • 513bigBed narrowPeak
  • 256tagAlign
  • 197bed broadPeak
  • 166bed bed3+
  • 162bigBed broadPeak
  • 153txt
  • 153zippedFastqFolder
  • 64xls
  • 16bed bedMethyl
  • 16bigBed bedMethyl
  • 11hic
  • 10bedpe bed3+
  • 6csv
  • 5bed bed3
  • 1vcf
Organism
  • 166Homo sapiens
Biosample type
  • 155tissue
  • 10primary cell
  • 1in vitro differentiated cells
Organ
  • 67kidney
  • 36limb
  • 33musculature of body
  • 21heart
  • 18brain
  • 18ureter
  • 7blood vessel
  • 7pancreas
  • 7vasculature
  • 6connective tissue
  • 4artery
  • 4epithelium
  • 4liver
  • 2adipose tissue
  • 2nerve
  • 1eye
  • 1spleen
  • 1vein
Project
  • 166AMP
Genome assembly (visualization)
  • 163GRCh38
  • 156hg19
Lab
  • 164AMP-T2D consortium
  • 2Kyle Gaulton, UCSD
Audit category:
  • 2inconsistent ontology term
BIOSAMPLE
ASSAY

166 results

search-icontable-tab-icon
Clear Filters
DNase-seq
total RNA-seq
ATAC-seq
ChIP-seq
tissue
muscle of arm17
heart14
muscle of leg13
brain12
kidney11
primary cell
CD8-positive, alpha-beta T cell2
brain pericyte1
endothelial cell of umbilical vein1
hepatic stellate cell1
hepatocyte1
in vitro differentiated cells
immature adipocyte1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego