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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 204DNase-seq
  • 28ChIP-seq
  • 5Hi-C
  • 4ATAC-seq
  • 2Capture-C
  • 2pCHi-C
  • 2total RNA-seq
  • 1snATAC-seq
Assay category
  • 209DNA accessibility
  • 28DNA binding
  • 53D chromatin structure
  • 2Transcription
Target of assay
  • 25histone
  • histone modification
  • 19transcription factor
  • 13narrow histone mark
  • 12broad histone mark
  • 9control
  • 2RNA binding protein
Date released
  • 187June, 2019
  • 21August, 2017
  • 9November, 2018
  • 8October, 2019
  • 5December, 2017
  • 4February, 2023
  • 4July, 2019
  • 2August, 2021
  • 2February, 2021
  • 2May, 2021
  • 2September, 2017
  • 1May, 2022
  • 1November, 2020
Available data
  • 2607bam
  • 2300bigWig
  • 1600tsv
  • 1128fastq
  • 966bed narrowPeak
  • 651bigBed narrowPeak
  • 257bed broadPeak
  • 255bigBed broadPeak
  • 248bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 77tagAlign
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1vcf
Organism
  • 248Homo sapiens
Biosample type
  • 193tissue
  • 34primary cell
  • 17in vitro differentiated cells
  • 3cell line
  • 1stem cell
Organ
  • 78kidney
  • 36limb
  • 35brain
  • 34musculature of body
  • 30heart
  • 27connective tissue
  • 18epithelium
  • 18ureter
  • 17pancreas
  • 13vasculature
  • 11blood vessel
  • 10liver
  • 6adipose tissue
  • 4artery
  • 4eye
  • 2nerve
  • 2vein
  • 1embryo
  • 1spleen
Project
  • 248AMP
Genome assembly (visualization)
  • 233GRCh38
  • 225hg19
Lab
  • 244AMP-T2D consortium
  • 2Kyle Gaulton, UCSD
  • 2Struan F.A. Grant, CHOP
Audit category:
  • 6inconsistent ontology term
  • 1audit script error
Audit category:
  • 10missing controlled_by
Audit category:
  • 4inconsistent control read length
  • 1inconsistent assembly
target.investigated_as!
  • histone modification
BIOSAMPLE
ASSAY

248 results

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Clear Filters
DNase-seq
ChIP-seq
Hi-C
ATAC-seq
Capture-C
pCHi-C
total RNA-seq
snATAC-seq
tissue
heart18
muscle of arm17
brain14
kidney13
muscle of leg13
primary cell
cardiac fibroblast3
CD8-positive, alpha-beta T cell2
astrocyte of the cerebellum11
brain microvascular endothelial cell11
brain pericyte11
in vitro differentiated cells
adipocyte711
immature adipocyte2
Posterior foregut1
definitive endodermal cell1
osteoblast1
cell line
Panc111
HepG21
stem cell
hESC1
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