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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 204DNase-seq
  • 40ChIP-seq
  • 5Hi-C
  • 4ATAC-seq
  • 2Capture-C
  • 2pCHi-C
  • 2total RNA-seq
  • 1snATAC-seq
Assay category
  • 209DNA accessibility
  • 40DNA binding
  • 53D chromatin structure
  • 2Transcription
Target of assay
  • 25histone
  • 25histone modification
  • 19transcription factor
  • narrow histone mark
  • 12broad histone mark
  • 9control
  • 2RNA binding protein
Date released
  • 187June, 2019
  • 27August, 2017
  • 10December, 2017
  • 9November, 2018
  • 8October, 2019
  • 4February, 2023
  • 4July, 2019
  • 3August, 2021
  • 2February, 2021
  • 2May, 2021
  • 2September, 2017
  • 1May, 2022
  • 1November, 2020
Available data
  • 2987bam
  • 2729bigWig
  • 1600tsv
  • 1388bed narrowPeak
  • 1248fastq
  • 893bigBed narrowPeak
  • 293bed broadPeak
  • 271bigBed broadPeak
  • 260bed bed3+
  • 224tagAlign
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1vcf
Organism
  • 260Homo sapiens
Biosample type
  • 199tissue
  • 35primary cell
  • 21in vitro differentiated cells
  • 3cell line
  • 2stem cell
Organ
  • 78kidney
  • 36limb
  • 35brain
  • 34musculature of body
  • 30heart
  • 27connective tissue
  • 23pancreas
  • 19epithelium
  • 18ureter
  • 13vasculature
  • 11blood vessel
  • 11liver
  • 6adipose tissue
  • 4artery
  • 4eye
  • 2embryo
  • 2nerve
  • 2vein
  • 1spleen
Project
  • 260AMP
Genome assembly (visualization)
  • 245GRCh38
  • 237hg19
Lab
  • 256AMP-T2D consortium
  • 2Kyle Gaulton, UCSD
  • 2Struan F.A. Grant, CHOP
Audit category:
  • 6inconsistent ontology term
  • 1audit script error
Audit category:
  • 11missing controlled_by
Audit category:
  • 9inconsistent control read length
  • 1inconsistent assembly
target.investigated_as!
  • narrow histone mark
BIOSAMPLE
ASSAY

260 results

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Clear Filters
DNase-seq
ChIP-seq
Hi-C
ATAC-seq
Capture-C
pCHi-C
total RNA-seq
snATAC-seq
tissue
heart18
muscle of arm17
islet of Langerhans15
brain14
kidney13
primary cell
cardiac fibroblast3
CD8-positive, alpha-beta T cell2
astrocyte of the cerebellum11
brain microvascular endothelial cell11
brain pericyte11
in vitro differentiated cells
adipocyte711
Posterior foregut2
definitive endodermal cell2
immature adipocyte2
pancreatic endoderm2
cell line
Panc111
HepG21
stem cell
hESC2
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