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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
RRBS
17
WGBS
12
ATAC-seq
Assay category
35
DNA methylation
12
DNA accessibility
Date released
22
July, 2019
10
February, 2023
7
November, 2018
6
August, 2017
2
February, 2021
Available data
3380
bam
3151
bigWig
1779
bed narrowPeak
1595
tsv
1346
fastq
1031
bigBed narrowPeak
398
tagAlign
317
bed broadPeak
280
bigBed broadPeak
269
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
35
bed bedMethyl
35
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
47
Homo sapiens
Biosample type
30
tissue
10
primary cell
5
in vitro differentiated cells
2
cell line
Organ
9
connective tissue
8
heart
6
epithelium
6
pancreas
4
bone element
4
kidney
4
liver
4
musculature of body
4
skeleton
3
brain
2
adipose tissue
2
spleen
2
vasculature
1
blood vessel
eye
1
limb
1
pericardium
Project
47
AMP
Genome assembly (visualization)
30
hg19
19
GRCh38
Lab
47
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
1
inconsistent replicate
month_released!
August, 2020
organ_slims!
eye
target.investigated_as!
other context
BIOSAMPLE
ASSAY
47 results
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Clear Filters
RRBS
WGBS
ATAC-seq
tissue
heart left ventricle
1
2
pancreas
1
2
adipose tissue
2
body of pancreas
2
brain
1
1
+ See 15 more…
primary cell
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
epithelial cell of proximal tubule
1
hepatocyte
1
+ See 5 more…
in vitro differentiated cells
chondrocyte
5
cell line
HepG2
1
1
See all biosamples
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