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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
16
ATAC-seq
Assay category
16
DNA accessibility
Date released
10
February, 2023
6
February, 2021
Available data
2945
bam
2734
bigWig
1795
bed narrowPeak
1309
fastq
1199
tsv
1027
bigBed narrowPeak
390
tagAlign
318
bed broadPeak
282
bigBed broadPeak
265
bed bed3+
158
txt
153
zippedFastqFolder
64
xls
34
bed bedMethyl
34
bigBed bedMethyl
23
hic
22
bedpe bed3+
12
bed bed3
8
csv
5
hdf5
4
bed bedgraph
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
16
Homo sapiens
Biosample type
9
in vitro differentiated cells
5
tissue
1
cell line
1
primary cell
Organ
10
connective tissue
4
bone element
4
skeleton
1
brain
1
liver
Project
16
AMP
Genome assembly (visualization)
16
hg19
2
GRCh38
Lab
16
AMP-T2D consortium
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent replicate
lab.title!
Struan F.A. Grant, CHOP
organ_slims!
adipose tissue
target.investigated_as!
other context
BIOSAMPLE
ASSAY
16 results
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ATAC-seq
in vitro differentiated cells
chondrocyte
5
adipocyte
4
tissue
acetabular part of hip bone
1
brain
1
ilium
1
ischium
1
pubis
1
cell line
HepG2
1
primary cell
osteoblast
1
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