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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
12
ATAC-seq
3
pCHi-C
1
Hi-C
Assay category
12
DNA accessibility
1
3D chromatin structure
Date released
10
February, 2023
2
February, 2021
2
March, 2020
1
August, 2018
1
August, 2021
Available data
3385
bam
3163
bigWig
1784
bed narrowPeak
1595
tsv
1358
fastq
1036
bigBed narrowPeak
398
tagAlign
318
bed broadPeak
281
bigBed broadPeak
269
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
35
bed bedMethyl
35
bigBed bedMethyl
23
bedpe bed3+
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
16
Homo sapiens
Biosample type
8
in vitro differentiated cells
6
tissue
1
cell line
1
primary cell
Organ
7
connective tissue
4
bone element
4
skeleton
1
adipose tissue
1
brain
1
liver
1
pancreas
Project
16
AMP
Genome assembly (visualization)
14
hg19
2
GRCh38
Lab
15
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
2
inconsistent ontology term
1
inconsistent replicate
files.file_type!
hic
lab.title!
Xin Sun, UCSD
organ_slims!
eye
BIOSAMPLE
ASSAY
16 results
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Clear Filters
ATAC-seq
pCHi-C
Hi-C
in vitro differentiated cells
chondrocyte
5
cardiomyocytes (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
white fat cell
1
tissue
acetabular part of hip bone
1
brain
1
ilium
1
ischium
1
islet of Langerhans
1
+ See 1 more…
cell line
HepG2
1
primary cell
osteoblast
1
See all biosamples
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