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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
19
RRBS
15
WGBS
12
ATAC-seq
Assay category
34
DNA methylation
12
DNA accessibility
Date released
23
July, 2019
10
February, 2023
6
August, 2017
5
November, 2018
2
February, 2021
Available data
3367
bam
3152
bigWig
1802
bed narrowPeak
1599
tsv
1334
fastq
1029
bigBed narrowPeak
397
tagAlign
321
bed broadPeak
284
bigBed broadPeak
272
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
34
bed bedMethyl
34
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
46
Homo sapiens
Biosample type
28
tissue
11
primary cell
5
in vitro differentiated cells
2
cell line
Organ
9
connective tissue
8
heart
6
epithelium
6
pancreas
4
bone element
4
kidney
4
liver
4
musculature of body
4
skeleton
3
brain
2
adipose tissue
spleen
2
vasculature
1
blood vessel
1
eye
1
limb
1
pericardium
Project
46
AMP
Genome assembly (visualization)
31
hg19
17
GRCh38
Lab
46
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
1
inconsistent replicate
lab.title!
Anna Gloyn, Oxford
organ_slims!
pituitary gland
spleen
BIOSAMPLE
ASSAY
46 results
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RRBS
WGBS
ATAC-seq
tissue
heart left ventricle
1
2
pancreas
1
2
adipose tissue
2
body of pancreas
2
brain
1
1
+ See 14 more…
primary cell
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
epithelial cell of proximal tubule
1
hepatocyte
1
+ See 6 more…
in vitro differentiated cells
chondrocyte
5
cell line
HepG2
1
1
See all biosamples
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