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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
257
ChIP-seq
37
DNase-seq
2
ATAC-seq
Assay category
257
DNA binding
39
DNA accessibility
Target of assay
163
histone
163
histone modification
98
narrow histone mark
65
broad histone mark
47
control
47
transcription factor
7
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
131
November, 2017
50
May, 2020
38
October, 2019
32
June, 2019
20
August, 2017
14
October, 2017
5
November, 2018
4
August, 2021
1
February, 2021
1
February, 2023
Available data
924
bam
844
bigWig
644
bed narrowPeak
486
fastq
485
bigBed narrowPeak
204
tagAlign
200
tsv
110
bed broadPeak
101
bigBed broadPeak
48
bed bed3+
5
bed bedMethyl
5
bigBed bedMethyl
4
hdf5
3
tar
2
bed bed3
2
bedpe bed3+
2
hic
1
csv
1
tagAlign bed3+
1
vcf
Organism
296
Homo sapiens
Biosample type
219
tissue
60
cell line
17
primary cell
Organ
157
brain
139
liver
78
kidney
48
musculature of body
37
connective tissue
36
heart
36
limb
29
epithelium
26
pancreas
23
vasculature
19
blood vessel
18
ureter
10
adipose tissue
10
artery
4
bone element
4
eye
4
skeleton
4
vein
2
nerve
1
pituitary gland
1
spleen
Project
296
AMP
Genome assembly (visualization)
192
GRCh38
167
hg19
Lab
296
AMP-T2D consortium
Audit category:
1
inconsistent replicate
Audit category:
4
missing controlled_by
Audit category:
13
inconsistent control read length
BIOSAMPLE
ASSAY
296 results
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ChIP-seq
DNase-seq
ATAC-seq
tissue
liver
70
2
brain
14
14
1
caudate nucleus
15
1
substantia nigra
16
layer of hippocampus
15
+ See 39 more…
cell line
HepG2
59
1
primary cell
hepatocyte
4
1
astrocyte of the cerebellum
2
1
brain microvascular endothelial cell
2
1
choroid plexus epithelial cell
2
1
astrocyte of the hippocampus
1
+ See 2 more…
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