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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
54
total RNA-seq
25
ChIP-seq
6
ATAC-seq
4
DNase-seq
Assay category
54
Transcription
25
DNA binding
10
DNA accessibility
Target of assay
20
histone
20
histone modification
14
broad histone mark
6
narrow histone mark
5
transcription factor
1
RNA binding protein
Date released
56
February, 2021
21
October, 2019
4
February, 2023
3
July, 2019
3
May, 2019
2
June, 2019
Available data
110
bam
85
bigWig
82
bed narrowPeak
58
tsv
25
bigBed narrowPeak
6
tagAlign
4
bed bed3
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
4
txt
Organism
89
Homo sapiens
Biosample type
56
cell line
31
tissue
2
primary cell
Organ
623
liver
623
pancreas
575
connective tissue
425
adipose tissue
301
epithelium
224
heart
223
brain
155
vasculature
150
blood vessel
131
kidney
91
limb
85
artery
68
musculature of body
62
bone element
55
blood
55
bodily fluid
31
nerve
29
embryo
18
ureter
16
spleen
15
vein
6
eye
4
skeleton
1
pericardium
1
pituitary gland
Project
89
AMP
Genome assembly (visualization)
89
hg19
85
GRCh38
Lab
89
AMP-T2D consortium
files.file_type!
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BIOSAMPLE
ASSAY
89 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
cell line
smooth muscle cell of the coronary artery
52
4
tissue
tibial artery
18
1
2
coronary artery
3
1
2
acetabular part of hip bone
1
ilium
1
ischium
1
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primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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