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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
395
total RNA-seq
5
ChIP-seq
3
ATAC-seq
3
small RNA-seq
2
DNase-seq
Assay category
398
Transcription
5
DNA accessibility
5
DNA binding
Target of assay
5
RNA binding protein
5
transcription factor
Date released
386
February, 2021
August, 2017
12
July, 2019
5
October, 2018
1
January, 2018
1
June, 2019
1
November, 2018
1
October, 2017
1
October, 2019
Available data
425
bam
408
bigWig
401
tsv
26
fastq
10
bed narrowPeak
8
bigBed narrowPeak
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
1
bedpe bed3+
0
bed bed3
Organism
408
Homo sapiens
Biosample type
406
tissue
2
primary cell
Organ
605
liver
510
connective tissue
464
pancreas
408
adipose tissue
284
epithelium
224
heart
223
brain
155
vasculature
150
blood vessel
131
kidney
91
limb
85
artery
62
bone element
55
blood
55
bodily fluid
55
musculature of body
31
nerve
29
embryo
18
ureter
16
spleen
15
vein
6
eye
4
skeleton
1
pericardium
1
pituitary gland
Project
408
AMP
Genome assembly (visualization)
408
hg19
406
GRCh38
Lab
408
AMP-T2D consortium
month_released!
August, 2017
BIOSAMPLE
ASSAY
408 results
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total RNA-seq
ChIP-seq
ATAC-seq
small RNA-seq
DNase-seq
tissue
adipose tissue
381
2
omental fat pad
4
3
1
1
2
subcutaneous adipose tissue
6
2
1
visceral abdominal adipose tissue
3
primary cell
mesenchymal stem cell of adipose
1
1
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