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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
450
ChIP-seq
5
total RNA-seq
3
DNase-seq
2
ATAC-seq
2
WGBS
1
Hi-C
1
RRBS
Assay category
450
DNA binding
5
DNA accessibility
5
Transcription
3
DNA methylation
1
3D chromatin structure
Target of assay
327
transcription factor
82
recombinant protein
77
control
57
RNA binding protein
45
histone modification
44
histone
25
broad histone mark
23
chromatin remodeller
19
narrow histone mark
2
other context
other post-translational modification
Date released
313
November, 2017
63
December, 2017
53
November, 2018
28
August, 2017
5
January, 2019
1
December, 2018
1
February, 2021
Available data
679
bam
620
bigWig
463
fastq
439
bed narrowPeak
356
bigBed narrowPeak
174
tsv
86
tagAlign
62
bed broadPeak
62
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
464
Homo sapiens
Biosample type
366
cell line
83
tissue
15
in vitro differentiated cells
Organ
471
pancreas
464
liver
257
epithelium
107
connective tissue
60
blood
60
bodily fluid
44
adipose tissue
27
embryo
22
brain
21
spleen
6
vasculature
4
bone element
4
skeleton
3
blood vessel
2
musculature of body
Project
464
AMP
Genome assembly (visualization)
389
hg19
342
GRCh38
Lab
464
AMP-T2D consortium
Audit category:
27
inconsistent control
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
target.investigated_as!
other post-translational modification
BIOSAMPLE
ASSAY
464 results
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ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
WGBS
Hi-C
RRBS
cell line
HepG2
358
5
1
1
1
tissue
liver
67
2
1
1
right lobe of liver
10
1
1
in vitro differentiated cells
hepatocyte
15
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