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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
8
ATAC-seq
1
ChIP-seq
Assay category
8
DNA accessibility
1
DNA binding
Target of assay
1
histone
1
histone modification
1
narrow histone mark
Date released
6
February, 2023
2
February, 2021
1
October, 2019
Available data
3326
bam
3106
bigWig
1805
bed narrowPeak
1542
tsv
1358
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
271
bed bed3+
153
zippedFastqFolder
70
txt
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
8
bed bed3
8
csv
5
hdf5
4
bed bedgraph
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
9
Homo sapiens
Biosample type
5
in vitro differentiated cells
2
tissue
1
cell line
1
primary cell
Organ
6
connective tissue
bone element
4
skeleton
2
brain
1
liver
Project
9
AMP
Genome assembly (visualization)
9
hg19
3
GRCh38
Lab
9
AMP-T2D consortium
Audit category:
1
inconsistent replicate
lab.title!
Struan F.A. Grant, CHOP
organ_slims!
bone element
BIOSAMPLE
ASSAY
9 results
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Clear Filters
ATAC-seq
ChIP-seq
in vitro differentiated cells
chondrocyte
5
tissue
brain
1
medial globus pallidus
1
cell line
HepG2
1
primary cell
osteoblast
1
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