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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
12
ATAC-seq
3
ChIP-seq
1
FAIRE-seq
Assay category
13
DNA accessibility
3
DNA binding
Target of assay
3
transcription factor
1
RNA binding protein
Date released
10
February, 2023
3
November, 2017
2
February, 2021
1
October, 2019
Available data
3392
bam
3159
bigWig
1817
bed narrowPeak
1594
tsv
1189
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
273
bed bed3+
161
txt
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
20
bedpe bed3+
20
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
16
Homo sapiens
Biosample type
5
in vitro differentiated cells
5
tissue
4
cell line
2
primary cell
Organ
6
connective tissue
4
bone element
4
liver
4
skeleton
1
blood vessel
1
brain
1
epithelium
1
vasculature
1
vein
Project
16
AMP
Genome assembly (visualization)
16
hg19
2
GRCh38
Lab
16
AMP-T2D consortium
Audit category:
1
inconsistent replicate
files.file_type!
ibed
lab.title!
Klaus Kaestner, Upenn
BIOSAMPLE
ASSAY
16 results
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ATAC-seq
ChIP-seq
FAIRE-seq
in vitro differentiated cells
chondrocyte
5
tissue
acetabular part of hip bone
1
brain
1
ilium
1
ischium
1
pubis
1
cell line
HepG2
1
3
primary cell
endothelial cell of umbilical vein
1
osteoblast
1
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