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Schema
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
869
chromatin state
Date released
833
September, 2022
9
May, 2019
7
April, 2019
6
January, 2020
5
May, 2021
5
October, 2019
3
May, 2020
1
November, 2019
Available data
5960
bed bed3+
3542
tsv
869
bed bed9
490
bigWig
108
txt
40
bigBed bed9
34
bed bed9+
26
csv
12
bed bed3
12
bed narrowPeak
4
bam
3
bed gappedPeak
3
xls
Organism
869
Homo sapiens
Collection Tags
833
EpiMap
5
DGA
1
AMP
1
T2DKP
Biosample type
486
tissue
179
cell line
164
primary cell
40
in vitro differentiated cells
Organ
77
kidney
71
musculature of body
70
lung
66
brain
55
intestine
50
epithelium
50
limb
46
heart
41
connective tissue
34
skin of body
33
extraembryonic component
33
large intestine
32
vasculature
27
blood vessel
27
embryo
25
bodily fluid
23
blood
23
stomach
19
small intestine
16
placenta
14
adrenal gland
14
bone element
14
liver
14
mammary gland
13
pancreas
13
prostate gland
13
ureter
11
thymus
10
penis
9
eye
8
adipose tissue
8
artery
8
gonad
8
lymph node
8
spinal cord
7
esophagus
6
spleen
5
lymphoid tissue
4
mouth
4
nerve
4
ovary
4
testis
4
thyroid gland
4
uterus
4
vein
3
skeleton
2
breast
2
bronchus
2
lymphatic vessel
2
tongue
2
urinary bladder
2
vagina
1
bone marrow
1
nose
Project
869
AMP
Genome assembly (visualization)
869
hg19
864
GRCh38
lab.title!
Kyle Gaulton, UCSD
BIOSAMPLE
TYPE
869 results
search-icon
table-tab-icon
Clear Filters
chromatin state
tissue
heart
21
stomach
19
brain
18
kidney
16
lung
16
muscle of arm
16
muscle of leg
15
small intestine
15
adrenal gland
14
placenta
14
large intestine
13
left lung
13
muscle of back
13
right lung
11
thymus
11
right kidney
10
left kidney
9
renal cortex interstitium
9
renal pelvis
9
heart left ventricle
8
liver
7
spinal cord
7
adipose tissue
6
spleen
6
heart right ventricle
5
sigmoid colon
5
angular gyrus
4
aorta
4
body of pancreas
4
chorionic villus
4
endocrine pancreas
4
gastrocnemius medialis
4
muscle of trunk
4
ovary
4
psoas muscle
4
temporal lobe
4
thyroid gland
4
tibial nerve
4
transverse colon
4
Peyer's patch
3
ascending aorta
3
caudate nucleus
3
chorion membrane
3
coronary artery
3
layer of hippocampus
3
retina
3
right cardiac atrium
3
skeletal muscle tissue
3
testis
3
thoracic aorta
3
tibial artery
3
upper lobe of left lung
3
Brodmann (1909) area 46
2
breast epithelium
2
cerebellum
2
cingulate gyrus
2
colonic mucosa
2
duodenal mucosa
2
esophagus
2
esophagus muscularis mucosa
2
esophagus squamous epithelium
2
eye
2
frontal cortex
2
germinal matrix
2
left renal cortex interstitium
2
left renal pelvis
2
limb
2
lower leg skin
2
mucosa of rectum
2
muscle layer of colon
2
muscle layer of duodenum
2
omental fat pad
2
pancreas
2
parathyroid adenoma
2
prostate gland
2
right atrium auricular region
2
right renal cortex interstitium
2
right renal pelvis
2
stomach smooth muscle
2
substantia nigra
2
tongue
2
trophoblast
2
urinary bladder
2
vagina
2
Ammon's horn
1
amnion
1
arm bone
1
cerebellar cortex
1
embryonic facial prominence
1
femur
1
gastroesophageal sphincter
1
germinal center
1
globus pallidus
1
inferior parietal cortex
1
left cardiac atrium
1
leg bone
1
medulla oblongata
1
midbrain
1
middle frontal gyrus
1
mucosa of stomach
1
occipital lobe
1
pons
1
putamen
1
rectum smooth muscle tissue
1
right lobe of liver
1
skin of body
1
superior temporal gyrus
1
umbilical cord
1
uterus
1
cell line
A549
18
K562
6
MCF-7
5
HeLa-S3
3
endometrium adenocarcinoma
3
immortal human breast epithelial cell line cell
3
22Rv1
2
LNCaP clone FGC
2
NAMALWA cell
2
SK-N-DZ
2
SK-N-SH
2
T47D
2
8988T
1
A172
1
A673
1
ACC112
1
ACHN
1
AG04449 cell
1
AG04450 cell
1
AG08395 cell
1
AG08396 cell
1
AG09309 cell
1
AG09319 cell
1
AG10803 cell
1
AG20443
1
BE(2)-C
1
BJ cell
1
C4-2B
1
CMK
1
COLO829
1
CWRU1
1
Caco-2 cell
1
Caki2
1
DND-41
1
DOHH2
1
Daoy
1
EH
1
EL
1
ELF-1
1
ELR
1
ES-I3
1
G401
1
GM03348
1
GM04503
1
GM04504
1
GM06990
1
GM08714
1
GM10248
1
GM10266
1
GM12864
1
GM12865
1
GM12875
1
GM12878
1
GM12891
1
GM12892
1
GM18507
1
GM19238
1
GM19239
1
GM19240
1
GM23248
1
GM23338
1
H1-hESC
1
H4
1
H54
1
H7-hESC
1
H9
1
HAP-1
1
HCT116
1
HEK293
1
HEK293T
1
HK-2 cell
1
HL-60
1
HPDE6-E6E7
1
HS-27A
1
HS-5
1
HT-29
1
HT1080
1
HTR-8/Svneo
1
HUES48
1
HUES6
1
HUES64
1
HepG2
1
HuH-7
1
HuH-7.5
1
IMR-90
1
KARPAS-422 cell
1
KBM-7
1
KMS-11
1
KOPT-K1
1
L1-S8
1
L1-S8R
1
LHCN-M2
1
LoVo cell
1
Loucy
1
M059J
1
MG63
1
MM.1S
1
NB4
1
NCI-H226 cell
1
NCI-H460 cell
1
NCI-H929
1
NT2-D1 cell
1
OCI-LY1
1
OCI-LY3
1
OCI-LY7
1
PC-3
1
PC-9
1
Panc1
1
RCC 7860
1
RPMI7951
1
RPMI8226
1
RWPE1
1
RWPE2
1
SJCRH30
1
SJSA1
1
SK-MEL-5
1
SK-N-MC
1
SU-DHL-6
1
SW480
1
UCSF-4
1
VCaP cell
1
WERI-Rb-1
1
WI38
1
colon carcinoma
1
colon epithelial cell
1
foreskin fibroblast
1
iPS DF 19.11
1
iPS DF 19.7
1
iPS DF 4.7 Cell Line
1
iPS DF 6.9
1
iPS-11a
1
iPS-15b
1
iPS-18a
1
iPS-18c
1
iPS-20b
1
iPS-NIHi11
1
iPS-NIHi7
1
lymphocyte
1
medulloblastoma
1
renal cell carcinoma
1
urothelium cell line
1
primary cell
common myeloid progenitor, CD34-positive
13
CD4-positive, alpha-beta memory T cell
9
B cell
8
CD8-positive, alpha-beta memory T cell
7
mononuclear cell
6
CD14-positive monocyte
4
T cell
4
endothelial cell of umbilical vein
4
foreskin keratinocyte
4
trophoblast cell
4
T-helper 1 cell
3
T-helper 17 cell
3
T-helper 2 cell
3
fibroblast of cardiac tissue
3
fibroblast of dermis
3
fibroblast of lung
3
mammary gland epithelial cell
3
naive T cell
3
natural killer cell
3
neurosphere
3
regulatory T cell
3
bronchial epithelial cell
2
dermis blood vessel endothelial cell
2
dermis lymphatic vessel endothelial cell
2
epithelial cell of prostate
2
fibroblast of breast
2
keratinocyte
2
kidney tubule cell
2
myoepithelial cell of mammary gland
2
neutrophil
2
skeletal muscle myoblast
2
skeletal muscle satellite cell
2
skin fibroblast
2
CD1c-positive myeloid dendritic cell
1
amnion mesenchymal stem cell
1
amniotic stem cell
1
astrocyte
1
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
astrocyte of the spinal cord
1
brain microvascular endothelial cell
1
choroid plexus epithelial cell
1
epidermal melanocyte
1
epithelial cell of amnion
1
epithelial cell of esophagus
1
epithelial cell of proximal tubule
1
fibroblast of gingiva
1
fibroblast of mammary gland
1
fibroblast of peridontal ligament
1
fibroblast of pulmonary artery
1
fibroblast of the aortic adventitia
1
fibroblast of the conjunctiva
1
fibroblast of villous mesenchyme
1
foreskin fibroblast
1
foreskin melanocyte
1
glomerular endothelial cell
1
glomerular visceral epithelial cell
1
hepatic stellate cell
1
hepatocyte
1
iris pigment epithelial cell
1
kidney capillary endothelial cell
1
kidney epithelial cell
1
kidney glomerular epithelial cell
1
luminal epithelial cell of mammary gland
1
lung microvascular endothelial cell
1
mammary stem cell
1
mesenchymal stem cell
1
non-pigmented ciliary epithelial cell
1
osteoblast
1
pericyte cell
1
pulmonary artery endothelial cell
1
regular cardiac myocyte
1
renal cortical epithelial cell
1
retinal pigment epithelial cell
1
skeletal muscle cell
1
smooth muscle cell of the brain vasculature
1
stromal cell of bone marrow
1
in vitro differentiated cells
hematopoietic multipotent progenitor cell
10
embryonic stem cell
5
neural progenitor cell
4
adipocyte
2
endodermal cell
2
mesenchymal stem cell
2
muscle cell
2
bipolar neuron
1
cardiac mesoderm primordium
1
cardiac muscle cell
1
ectodermal cell
1
hepatocyte
1
islet precursor cell
1
mesendoderm
1
mesodermal cell
1
neural cell
1
neuron
1
olfactory neurosphere cell line
1
smooth muscle cell
1
trophoblast cell
1
See all biosamples
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