Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
206
DNase-seq
79
ChIP-seq
58
WGBS
52
single cell RNA-seq
39
ATAC-seq
21
snATAC-seq
19
RRBS
Assay category
266
DNA accessibility
79
DNA binding
77
DNA methylation
52
Transcription
Target of assay
49
transcription factor
30
histone
30
histone modification
16
broad histone mark
14
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
187
June, 2019
134
May, 2022
64
November, 2017
23
July, 2019
21
August, 2017
19
September, 2020
16
November, 2018
9
October, 2019
1
November, 2020
Available data
3392
bam
3169
bigWig
1817
bed narrowPeak
1600
tsv
1358
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
273
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
474
Homo sapiens
Biosample type
212
primary cell
201
tissue
60
cell line
1
in vitro differentiated cells
Organ
108
epithelium
93
pancreas
82
kidney
66
liver
40
brain
38
heart
37
limb
37
musculature of body
19
vasculature
18
ureter
14
blood vessel
12
connective tissue
5
eye
4
adipose tissue
4
artery
4
vein
3
spleen
2
nerve
1
pericardium
Project
321
AMP
153
HPAP
Genome assembly (visualization)
284
GRCh38
281
hg19
Lab
321
AMP-T2D consortium
153
Klaus Kaestner, Upenn
Audit category:
6
inconsistent ontology term
Audit category:
13
inconsistent control read length
1
inconsistent assembly
BIOSAMPLE
ASSAY
474 results
search-icon
table-tab-icon
Clear Filters
DNase-seq
ChIP-seq
WGBS
single cell RNA-seq
ATAC-seq
snATAC-seq
RRBS
primary cell
Langerhans cell
52
21
pancreatic alpha cell
25
22
pancreatic beta cell
16
13
skeletal muscle myoblast
1
13
1
cardiac fibroblast
3
1
+ See 22 more…
tissue
heart
18
1
muscle of arm
17
brain
14
1
kidney
13
1
muscle of leg
13
1
+ See 45 more…
cell line
HepG2
58
1
Panc1
1
in vitro differentiated cells
adipocyte
1
See all biosamples
Download