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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
201
DNase-seq
21
ChIP-seq
17
RRBS
16
WGBS
Assay category
201
DNA accessibility
33
DNA methylation
21
DNA binding
Target of assay
16
histone
16
histone modification
8
broad histone mark
8
narrow histone mark
5
RNA binding protein
5
transcription factor
1
chromatin remodeller
Date released
185
June, 2019
22
July, 2019
20
August, 2017
12
November, 2018
9
October, 2019
6
November, 2017
1
November, 2020
Available data
2710
bam
2547
bigWig
1426
tsv
1376
bed narrowPeak
892
fastq
684
bigBed narrowPeak
312
tagAlign
260
bed bed3+
258
bed broadPeak
222
bigBed broadPeak
161
txt
153
zippedFastqFolder
64
xls
33
bed bedMethyl
33
bigBed bedMethyl
21
bedpe bed3+
20
hic
11
bed bed3
7
bed bedgraph
7
csv
4
hdf5
3
cool
2
ibed
1
tagAlign bed3+
1
tar
Organism
255
Homo sapiens
Biosample type
197
tissue
56
primary cell
1
cell line
1
in vitro differentiated cells
Organ
82
kidney
liver
40
brain
38
heart
37
limb
37
musculature of body
28
epithelium
19
vasculature
18
ureter
14
blood vessel
13
pancreas
12
connective tissue
5
eye
4
adipose tissue
4
artery
4
vein
3
spleen
2
nerve
1
pericardium
Project
255
AMP
Genome assembly (visualization)
234
GRCh38
216
hg19
Lab
255
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
Audit category:
1
inconsistent assembly
month_released!
March, 2019
organ_slims!
liver
BIOSAMPLE
ASSAY
255 results
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Clear Filters
DNase-seq
ChIP-seq
RRBS
WGBS
tissue
heart
18
1
muscle of arm
17
brain
14
1
kidney
13
1
muscle of leg
13
1
+ See 43 more…
primary cell
skeletal muscle myoblast
1
13
1
cardiac fibroblast
3
1
choroid plexus epithelial cell
1
2
1
endothelial cell of umbilical vein
2
2
astrocyte of the cerebellum
1
2
+ See 16 more…
cell line
Panc1
1
in vitro differentiated cells
adipocyte
1
See all biosamples
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