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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
195
DNase-seq
59
ChIP-seq
18
RRBS
16
WGBS
Assay category
195
DNA accessibility
59
DNA binding
34
DNA methylation
Target of assay
47
transcription factor
26
histone
26
histone modification
broad histone mark
12
narrow histone mark
7
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
180
June, 2019
52
November, 2017
21
July, 2019
16
November, 2018
15
August, 2017
3
October, 2019
1
November, 2020
Available data
2874
bam
2630
bigWig
1532
tsv
1305
bed narrowPeak
1234
fastq
758
bigBed narrowPeak
271
bed broadPeak
254
bigBed broadPeak
248
bed bed3+
245
tagAlign
161
txt
153
zippedFastqFolder
64
xls
34
bed bedMethyl
34
bigBed bedMethyl
21
bedpe bed3+
20
hic
12
bed bed3
8
csv
7
bed bedgraph
3
cool
3
hdf5
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
288
Homo sapiens
Biosample type
195
tissue
52
cell line
40
primary cell
1
in vitro differentiated cells
Organ
82
kidney
58
liver
40
brain
38
heart
37
limb
37
musculature of body
26
epithelium
18
ureter
vasculature
13
pancreas
12
blood vessel
12
connective tissue
5
eye
4
adipose tissue
4
artery
3
spleen
2
nerve
2
vein
1
pericardium
Project
288
AMP
Genome assembly (visualization)
255
GRCh38
250
hg19
Lab
288
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
Audit category:
7
inconsistent control read length
organ_slims!
vasculature
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
288 results
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DNase-seq
ChIP-seq
RRBS
WGBS
tissue
heart
18
1
muscle of arm
17
brain
14
1
kidney
13
1
muscle of leg
13
1
+ See 41 more…
cell line
HepG2
50
1
Panc1
1
primary cell
skeletal muscle myoblast
1
7
1
cardiac fibroblast
3
1
astrocyte of the cerebellum
1
2
cardiac muscle cell
1
1
epithelial cell of proximal tubule
1
1
+ See 13 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
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