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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
26
ChIP-seq
22
ATAC-seq
14
DNase-seq
6
RRBS
Assay category
36
DNA accessibility
26
DNA binding
6
DNA methylation
Target of assay
19
histone
19
histone modification
10
narrow histone mark
9
broad histone mark
7
RNA binding protein
7
transcription factor
1
chromatin remodeller
Date released
18
June, 2019
14
December, 2017
October, 2019
14
September, 2018
6
July, 2019
5
September, 2017
4
May, 2019
4
November, 2017
3
August, 2017
Available data
285
bam
273
bigWig
238
fastq
153
tsv
130
bed narrowPeak
80
zippedFastqFolder
62
bigBed narrowPeak
19
bed bed3+
18
bed broadPeak
18
bigBed broadPeak
7
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
5
bedpe bed3+
5
hic
3
cool
2
hdf5
Organism
68
Homo sapiens
Biosample type
54
primary cell
14
in vitro differentiated cells
Organ
361
liver
129
brain
107
kidney
102
heart
90
pancreas
68
epithelium
54
blood
54
bodily fluid
52
vasculature
51
musculature of body
47
blood vessel
39
limb
28
connective tissue
18
ureter
15
spleen
11
adipose tissue
7
eye
5
artery
1
pericardium
Project
68
AMP
Genome assembly (visualization)
62
GRCh38
62
hg19
Lab
68
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
month_released!
October, 2019
September, 2020
BIOSAMPLE
ASSAY
68 results
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ChIP-seq
ATAC-seq
DNase-seq
RRBS
primary cell
pancreatic beta cell
7
kidney epithelial cell
4
1
1
pancreatic alpha cell
6
pancreatic acinar cell
5
choroid plexus epithelial cell
2
1
1
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in vitro differentiated cells
hepatocyte
14
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