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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
total RNA-seq
18
small RNA-seq
15
RRBS
7
WGBS
4
ATAC-seq
3
single cell RNA-seq
2
FAIRE-seq
2
Hi-C
Assay category
60
Transcription
22
DNA methylation
6
DNA accessibility
2
3D chromatin structure
Target of assay
3
control
Date released
495
February, 2021
331
November, 2017
303
May, 2021
276
August, 2017
260
May, 2020
205
June, 2019
171
October, 2019
164
July, 2018
90
July, 2019
80
November, 2018
72
December, 2017
72
September, 2018
65
April, 2019
58
May, 2019
49
April, 2018
47
August, 2021
47
October, 2018
40
May, 2024
31
February, 2018
31
November, 2019
30
December, 2018
26
January, 2019
20
May, 2022
19
March, 2020
14
October, 2017
8
January, 2018
7
August, 2020
5
December, 2019
5
November, 2020
5
September, 2017
3
August, 2018
3
February, 2023
3
June, 2018
3
September, 2020
Available data
75
bigWig
73
bam
60
tsv
22
bed bedMethyl
22
bigBed bedMethyl
5
bed narrowPeak
2
bed bed3+
2
bigBed narrowPeak
2
hdf5
Organism
90
Homo sapiens
Biosample type
63
tissue
27
primary cell
Organ
23
heart
18
brain
18
connective tissue
13
epithelium
12
adipose tissue
11
kidney
11
vasculature
blood vessel
9
liver
6
musculature of body
6
pancreas
3
artery
2
pericardium
1
eye
1
limb
Project
90
AMP
Genome assembly (visualization)
82
hg19
71
GRCh38
Lab
90
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
90 results
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total RNA-seq
small RNA-seq
RRBS
WGBS
ATAC-seq
single cell RNA-seq
FAIRE-seq
Hi-C
tissue
heart left ventricle
2
1
2
2
omental fat pad
4
1
subcutaneous adipose tissue
4
1
body of pancreas
2
2
heart
2
1
1
+ See 21 more…
primary cell
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
1
mesenchymal stem cell of adipose
1
1
renal cortical epithelial cell
1
1
+ See 16 more…
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