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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
81
total RNA-seq
66
single cell RNA-seq
57
ChIP-seq
32
ATAC-seq
6
WGBS
5
RRBS
Assay category
147
Transcription
57
DNA binding
32
DNA accessibility
11
DNA methylation
Target of assay
39
histone
39
histone modification
23
narrow histone mark
16
broad histone mark
16
control
2
RNA binding protein
2
transcription factor
Date released
61
September, 2018
37
February, 2023
33
July, 2018
29
April, 2018
29
August, 2017
19
September, 2020
7
August, 2020
6
February, 2021
6
November, 2017
5
July, 2019
5
September, 2017
4
December, 2017
3
August, 2018
2
October, 2018
1
June, 2018
Available data
291
bam
277
bigWig
242
fastq
151
tsv
132
bed narrowPeak
80
zippedFastqFolder
61
bigBed narrowPeak
21
bed broadPeak
21
bigBed broadPeak
16
bed bed3+
6
hic
5
bed bedMethyl
5
bedpe bed3+
5
bigBed bedMethyl
3
cool
3
tagAlign
1
hdf5
1
tar
Organism
247
Homo sapiens
Biosample type
243
primary cell
4
in vitro differentiated cells
Organ
473
pancreas
liver
263
epithelium
102
connective tissue
60
blood
60
bodily fluid
44
adipose tissue
27
embryo
24
spleen
23
brain
8
heart
8
vasculature
4
blood vessel
4
kidney
4
musculature of body
1
eye
1
limb
1
pericardium
Project
178
AMP
69
HPAP
Genome assembly (visualization)
167
GRCh38
164
hg19
Lab
178
AMP-T2D consortium
69
Klaus Kaestner, Upenn
Audit category:
6
inconsistent ontology term
Audit category:
21
missing controlled_by
Audit category:
5
inconsistent control read length
organ_slims!
liver
BIOSAMPLE
ASSAY
247 results
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total RNA-seq
single cell RNA-seq
ChIP-seq
ATAC-seq
WGBS
RRBS
primary cell
pancreatic alpha cell
52
12
13
13
6
pancreatic beta cell
21
12
13
10
pancreatic ductal cell
4
9
13
4
pancreatic acinar cell
4
9
8
5
pancreatic delta cell
11
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in vitro differentiated cells
Hepatic endoderm
4
See all biosamples
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