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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
60
total RNA-seq
6
single cell RNA-seq
1
RRBS
1
WGBS
1
pCHi-C
Assay category
66
Transcription
2
DNA methylation
Date released
52
February, 2021
7
July, 2019
6
August, 2021
2
February, 2020
2
March, 2020
Available data
159
bam
134
bigWig
112
bed narrowPeak
67
tsv
63
bigBed narrowPeak
15
bed broadPeak
15
bigBed broadPeak
11
bed bed3+
6
fastq
6
tagAlign
hic
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hdf5
1
tar
Organism
69
Homo sapiens
Biosample type
52
cell line
14
tissue
3
primary cell
Organ
481
connective tissue
423
pancreas
403
adipose tissue
177
liver
176
heart
162
epithelium
70
vasculature
69
blood vessel
58
artery
58
bone element
28
brain
28
kidney
14
embryo
13
musculature of body
limb
6
eye
5
nerve
3
spleen
2
intestine
2
pericardium
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
69
AMP
Genome assembly (visualization)
59
GRCh38
59
hg19
Lab
69
AMP-T2D consortium
files.file_type!
hic
organ_slims!
limb
BIOSAMPLE
ASSAY
69 results
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total RNA-seq
single cell RNA-seq
RRBS
WGBS
pCHi-C
cell line
smooth muscle cell of the coronary artery
52
tissue
aorta
1
4
1
1
ascending aorta
2
pulmonary artery
2
thoracic aorta
2
coronary artery
1
primary cell
choroid plexus epithelial cell
1
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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