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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 19RRBS
  • 13WGBS
Assay category
  • 32DNA methylation
Date released
  • 23July, 2019
  • 5November, 2018
  • 4August, 2017
Available data
  • 3214bam
  • 3009bigWig
  • 1706bed narrowPeak
  • 1566tsv
  • 1171fastq
  • 954bigBed narrowPeak
  • 398tagAlign
  • 319bed broadPeak
  • 283bigBed broadPeak
  • 256bed bed3+
  • 161txt
  • 152zippedFastqFolder
  • 64xls
  • 32bed bedMethyl
  • 32bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 7bed bedgraph
  • 6csv
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 32Homo sapiens
Biosample type
  • 21tissue
  • 10primary cell
  • 1cell line
Organ
  • 8heart
  • 6epithelium
  • 4kidney
  • 4musculature of body
  • 4pancreas
  • 3liver
  • 2brain
  • 2spleen
  • 2vasculature
  • 1blood vessel
  • 1connective tissue
  • 1eye
  • 1limb
  • 1pericardium
Project
  • 32AMP
Genome assembly (visualization)
  • 19hg19
  • 13GRCh38
Lab
  • 32AMP-T2D consortium
Audit category:
  • 2inconsistent ontology term
files.platform.term_name!
  • Illumina HiSeq 2500
BIOSAMPLE
ASSAY

32 results

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RRBS
WGBS
tissue
heart left ventricle12
body of pancreas2
heart right ventricle2
skeletal muscle tissue2
spleen2
primary cell
cardiac fibroblast1
cardiac muscle cell1
choroid plexus epithelial cell1
epithelial cell of proximal tubule1
hepatocyte1
cell line
HepG21
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