Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 15RRBS
  • 15WGBS
Assay category
  • 30DNA methylation
Date released
  • 23July, 2019
  • 7November, 2018
  • August, 2017
Available data
  • 3110bam
  • 2897bigWig
  • 1675bed narrowPeak
  • 1511tsv
  • 1071fastq
  • 1000bigBed narrowPeak
  • 313tagAlign
  • 281bed broadPeak
  • 270bigBed broadPeak
  • 240bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 30bed bedMethyl
  • 30bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 30Homo sapiens
Biosample type
  • 20tissue
  • 9primary cell
  • 1cell line
Organ
  • 8heart
  • 6epithelium
  • 6pancreas
  • 4kidney
  • 2brain
  • 2liver
  • 2musculature of body
  • 2spleen
  • 2vasculature
  • 1blood vessel
  • 1connective tissue
  • 1eye
  • 1limb
  • 1pericardium
Project
  • 30AMP
Genome assembly (visualization)
  • 15GRCh38
  • 15hg19
Lab
  • 30AMP-T2D consortium
Audit category:
  • 2inconsistent ontology term
month_released!
  • August, 2017
BIOSAMPLE
ASSAY

30 results

search-icontable-tab-icon
Clear Filters
RRBS
WGBS
tissue
heart left ventricle12
pancreas12
body of pancreas2
heart right ventricle2
spleen2
primary cell
cardiac fibroblast1
cardiac muscle cell1
choroid plexus epithelial cell1
epithelial cell of proximal tubule1
hepatocyte1
cell line
HepG21
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego