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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
19
RRBS
14
WGBS
7
ATAC-seq
2
pCHi-C
Assay category
33
DNA methylation
7
DNA accessibility
Date released
22
July, 2019
6
August, 2017
5
November, 2018
4
February, 2021
3
February, 2023
2
March, 2020
Available data
3254
bam
3062
bigWig
1711
bed narrowPeak
1592
tsv
1334
fastq
945
bigBed narrowPeak
398
tagAlign
285
bed broadPeak
248
bigBed broadPeak
236
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
33
bed bedMethyl
33
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
42
Homo sapiens
Biosample type
22
tissue
10
primary cell
9
in vitro differentiated cells
1
cell line
Organ
8
heart
7
connective tissue
6
epithelium
6
pancreas
4
kidney
4
musculature of body
3
liver
2
adipose tissue
2
brain
spleen
2
vasculature
1
blood vessel
1
eye
limb
1
pericardium
Project
42
AMP
Genome assembly (visualization)
28
hg19
14
GRCh38
Lab
39
AMP-T2D consortium
3
Struan F.A. Grant, CHOP
Audit category:
5
inconsistent ontology term
organ_slims!
limb
spleen
BIOSAMPLE
ASSAY
42 results
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Clear Filters
RRBS
WGBS
ATAC-seq
pCHi-C
tissue
heart left ventricle
1
2
pancreas
1
2
adipose tissue
2
body of pancreas
2
heart right ventricle
2
+ See 9 more…
primary cell
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
epithelial cell of proximal tubule
1
hepatocyte
1
+ See 5 more…
in vitro differentiated cells
adipocyte
4
Progenitor cell of Hypothalamus (neural progenitor cell)
1
cardiomyocytes (cardiac muscle cell)
1
embryonic stem cell
1
lymphocyte of B lineage (iPSC)
1
+ See 1 more…
cell line
HepG2
1
See all biosamples
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