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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
76
total RNA-seq
34
ChIP-seq
3
ATAC-seq
1
Hi-C
Assay category
76
Transcription
34
DNA binding
3
DNA accessibility
1
3D chromatin structure
Target of assay
28
transcription factor
4
control
2
RNA binding protein
2
chromatin remodeller
Date released
324
November, 2017
287
August, 2017
94
December, 2017
88
November, 2018
79
February, 2023
73
September, 2018
60
October, 2018
50
July, 2018
49
February, 2021
44
April, 2018
41
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
24
May, 2022
17
October, 2017
11
September, 2017
7
August, 2020
5
January, 2018
4
August, 2018
3
June, 2018
1
March, 2019
Available data
111
fastq
95
bed narrowPeak
34
bam
33
bigWig
30
bigBed narrowPeak
16
tsv
10
bed bed3
7
txt
4
bed bed3+
3
bed bedgraph
Organism
114
Homo sapiens
Biosample type
76
primary cell
28
cell line
7
tissue
3
in vitro differentiated cells
Organ
37
epithelium
37
pancreas
27
blood
27
bodily fluid
7
spleen
1
liver
Project
76
HPAP
38
AMP
Genome assembly (visualization)
33
hg19
30
GRCh38
Lab
76
Klaus Kaestner, Upenn
35
AMP-T2D consortium
3
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent control
1
inconsistent ontology term
files.file_type!
cool
BIOSAMPLE
ASSAY
114 results
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total RNA-seq
ChIP-seq
ATAC-seq
Hi-C
primary cell
exocrine cell
39
pancreatic alpha cell
27
pancreatic beta cell
10
cell line
GM12878
27
HepG2
1
tissue
spleen
7
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
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