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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
197
DNase-seq
112
ChIP-seq
2
ATAC-seq
Assay category
199
DNA accessibility
112
DNA binding
Target of assay
64
histone
64
histone modification
49
transcription factor
36
broad histone mark
28
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
other context
1
other post-translational modification
Date released
181
June, 2019
69
November, 2017
39
August, 2017
9
October, 2019
8
November, 2018
4
October, 2017
1
March, 2019
Available data
2794
bam
2594
bigWig
1737
bed narrowPeak
1252
fastq
1122
tsv
1009
bigBed narrowPeak
376
tagAlign
311
bed broadPeak
275
bigBed broadPeak
246
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
33
bed bedMethyl
33
bigBed bedMethyl
23
hic
22
bedpe bed3+
8
csv
bed bed3
4
hdf5
4
tar
3
bed bedgraph
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
305
Homo sapiens
Biosample type
210
tissue
58
cell line
43
primary cell
Organ
78
kidney
62
liver
47
brain
46
musculature of body
36
limb
30
heart
22
epithelium
21
pancreas
18
ureter
17
vasculature
13
blood vessel
connective tissue
4
artery
4
eye
4
vein
3
adipose tissue
2
nerve
1
spleen
Project
311
AMP
Genome assembly (visualization)
288
hg19
272
GRCh38
Lab
309
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
3
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
13
inconsistent control read length
2
inconsistent assembly
files.file_type!
bed bed3
organ_slims!
connective tissue
target.investigated_as!
other context
BIOSAMPLE
ASSAY
311 results
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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
brain
14
3
muscle of arm
17
kidney
13
muscle of leg
13
+ See 43 more…
cell line
HepG2
57
Panc1
1
primary cell
skeletal muscle myoblast
1
13
endothelial cell of umbilical vein
2
2
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
choroid plexus epithelial cell
1
2
+ See 14 more…
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