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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
35
ChIP-seq
2
ATAC-seq
Assay category
35
DNA binding
2
DNA accessibility
Target of assay
35
histone
35
histone modification
20
broad histone mark
15
narrow histone mark
Date released
26
August, 2017
6
November, 2017
4
October, 2017
1
March, 2019
Available data
3392
bam
3169
bigWig
1817
bed narrowPeak
1600
tsv
1358
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
bigBed broadPeak
273
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
vcf
Organism
31
Homo sapiens
Biosample type
37
tissue
Organ
14
pancreas
13
musculature of body
9
brain
1
adipose tissue
1
connective tissue
Project
37
AMP
Genome assembly (visualization)
36
hg19
15
GRCh38
Lab
35
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
2
missing controlled_by
Audit category:
1
inconsistent assembly
files.file_type!
bed bedgraph
bigBed broadPeak
vcf
BIOSAMPLE
ASSAY
37 results
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Clear Filters
ChIP-seq
ATAC-seq
tissue
skeletal muscle tissue
13
islet of Langerhans
6
2
pancreas
6
brain
3
cingulate gyrus
2
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