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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
12
ChIP-seq
11
DNase-seq
2
ATAC-seq
Assay category
13
DNA accessibility
12
DNA binding
Target of assay
12
histone
12
histone modification
8
broad histone mark
4
narrow histone mark
Date released
12
August, 2017
6
June, 2019
3
October, 2019
2
November, 2018
1
March, 2019
1
October, 2017
Available data
791
bam
708
bigWig
475
tsv
471
fastq
288
bed narrowPeak
116
bigBed narrowPeak
80
zippedFastqFolder
33
bed bed3+
25
bed broadPeak
25
tagAlign
11
bigBed broadPeak
bedpe bed3+
7
hic
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
3
cool
1
bedpe
1
hdf5
Organism
19
Homo sapiens
Biosample type
24
tissue
1
cell line
Organ
78
kidney
63
liver
47
brain
46
musculature of body
36
limb
30
heart
22
epithelium
21
pancreas
18
ureter
17
vasculature
13
blood vessel
10
connective tissue
4
artery
4
eye
4
vein
3
adipose tissue
2
nerve
1
spleen
Project
25
AMP
Genome assembly (visualization)
22
hg19
18
GRCh38
Lab
23
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
1
inconsistent assembly
files.file_type!
bedpe bed3+
month_released!
April, 2019
BIOSAMPLE
ASSAY
25 results
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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
tissue
islet of Langerhans
6
2
pancreas
6
2
body of pancreas
4
coronary artery
2
tibial artery
2
cell line
Panc1
1
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