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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
166
DNase-seq
98
ChIP-seq
2
ATAC-seq
Assay category
168
DNA accessibility
98
DNA binding
Target of assay
52
histone
52
histone modification
46
transcription factor
32
broad histone mark
20
narrow histone mark
6
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
152
June, 2019
58
November, 2017
39
August, 2017
9
October, 2019
6
November, 2018
1
March, 2019
1
October, 2017
Available data
2557
bam
2369
bigWig
1540
bed narrowPeak
1090
tsv
1067
fastq
888
bigBed narrowPeak
266
bed broadPeak
258
tagAlign
239
bigBed broadPeak
213
bed bed3+
161
txt
64
xls
31
bed bedMethyl
bigBed bedMethyl
20
hic
19
bedpe bed3+
8
csv
5
bed bed3
4
tar
3
bed bedgraph
2
hdf5
2
ibed
1
bedpe
1
vcf
Organism
260
Homo sapiens
Biosample type
174
tissue
59
cell line
33
primary cell
Organ
78
kidney
63
liver
brain
46
musculature of body
36
limb
30
heart
22
epithelium
21
pancreas
18
ureter
17
vasculature
13
blood vessel
connective tissue
4
artery
4
eye
4
vein
3
adipose tissue
2
nerve
1
spleen
Project
266
AMP
Genome assembly (visualization)
253
hg19
228
GRCh38
Lab
264
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
3
inconsistent ontology term
Audit category:
13
inconsistent control read length
2
inconsistent assembly
files.file_type!
bigBed bedMethyl
lab.title!
Klaus Kaestner, Upenn
organ_slims!
brain
connective tissue
BIOSAMPLE
ASSAY
266 results
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DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
muscle of arm
17
kidney
13
muscle of leg
13
skeletal muscle tissue
13
+ See 27 more…
cell line
HepG2
58
Panc1
1
primary cell
skeletal muscle myoblast
1
13
endothelial cell of umbilical vein
2
2
glomerular visceral epithelial cell
2
kidney tubule cell
2
cardiac muscle cell
1
+ See 10 more…
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