Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 35ChIP-seq
  • 2ATAC-seq
Assay category
  • 35DNA binding
  • 2DNA accessibility
Target of assay
  • 35histone
  • 35histone modification
  • 20broad histone mark
  • 15narrow histone mark
Date released
  • 26August, 2017
  • 6November, 2017
  • 4October, 2017
  • 1March, 2019
Available data
  • 3392bam
  • 3169bigWig
  • 1817bed narrowPeak
  • 1600tsv
  • 1358fastq
  • 1042bigBed narrowPeak
  • 398tagAlign
  • 322bed broadPeak
  • bigBed broadPeak
  • 273bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 31Homo sapiens
Biosample type
  • 37tissue
Organ
  • 14pancreas
  • 13musculature of body
  • 9brain
  • 1adipose tissue
  • 1connective tissue
Project
  • 37AMP
Genome assembly (visualization)
  • 36hg19
  • 15GRCh38
Lab
  • 35AMP-T2D consortium
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 2missing controlled_by
Audit category:
  • 1inconsistent assembly
files.file_type!
  • bigBed broadPeak
BIOSAMPLE
ASSAY

37 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
tissue
skeletal muscle tissue13
islet of Langerhans62
pancreas6
brain3
cingulate gyrus2
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego