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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ChIP-seq
2
ATAC-seq
Assay category
28
DNA binding
2
DNA accessibility
Target of assay
24
histone
24
histone modification
15
broad histone mark
9
narrow histone mark
4
transcription factor
Date released
20
August, 2017
6
November, 2017
2
October, 2019
1
March, 2019
1
October, 2017
Available data
3142
bam
2941
bigWig
1608
bed narrowPeak
1574
tsv
1330
fastq
bigBed narrowPeak
273
tagAlign
269
bed broadPeak
247
bigBed broadPeak
238
bed bed3+
160
txt
153
zippedFastqFolder
64
xls
34
bed bedMethyl
34
bigBed bedMethyl
23
bedpe bed3+
23
hic
11
bed bed3
8
csv
7
bed bedgraph
4
tar
3
cool
2
hdf5
2
ibed
1
bedpe
1
vcf
Organism
30
Homo sapiens
Biosample type
22
tissue
6
cell line
2
primary cell
Organ
13
musculature of body
8
pancreas
6
liver
2
blood vessel
2
epithelium
2
vasculature
2
vein
1
adipose tissue
brain
1
connective tissue
Project
30
AMP
Genome assembly (visualization)
29
hg19
1
GRCh38
Lab
28
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
2
inconsistent control read length
files.file_type!
bigBed narrowPeak
month_released!
August, 2022
organ_slims!
brain
BIOSAMPLE
ASSAY
30 results
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Clear Filters
ChIP-seq
ATAC-seq
tissue
skeletal muscle tissue
13
islet of Langerhans
6
2
subcutaneous abdominal adipose tissue
1
cell line
HepG2
6
primary cell
endothelial cell of umbilical vein
2
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