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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
193
DNase-seq
28
ChIP-seq
Assay category
193
DNA accessibility
28
DNA binding
Target of assay
28
histone
28
histone modification
16
broad histone mark
12
narrow histone mark
Date released
187
June, 2019
20
August, 2017
7
October, 2019
6
November, 2017
1
November, 2020
Available data
3340
bam
3128
bigWig
1785
bed narrowPeak
1586
tsv
fastq
1011
bigBed narrowPeak
398
tagAlign
319
bed broadPeak
282
bigBed broadPeak
271
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
221
Homo sapiens
Biosample type
191
tissue
29
primary cell
1
cell line
Organ
78
kidney
46
musculature of body
36
brain
36
limb
30
heart
18
epithelium
18
ureter
13
vasculature
11
blood vessel
11
pancreas
8
connective tissue
4
artery
4
eye
4
vein
2
adipose tissue
2
liver
nerve
Project
221
AMP
Genome assembly (visualization)
198
GRCh38
198
hg19
Lab
221
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
files.file_type!
fastq
month_released!
December, 2019
organ_slims!
nerve
target.investigated_as!
other context
BIOSAMPLE
ASSAY
221 results
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Clear Filters
DNase-seq
ChIP-seq
tissue
heart
18
muscle of arm
17
kidney
13
muscle of leg
13
skeletal muscle tissue
13
+ See 41 more…
primary cell
endothelial cell of umbilical vein
2
2
cardiac fibroblast
3
glomerular visceral epithelial cell
2
kidney tubule cell
2
astrocyte of the cerebellum
1
+ See 17 more…
cell line
Panc1
1
See all biosamples
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