Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
197
DNase-seq
50
ChIP-seq
2
ATAC-seq
Assay category
199
DNA accessibility
50
DNA binding
Target of assay
48
transcription factor
8
RNA binding protein
5
chromatin remodeller
5
histone
5
histone modification
narrow histone mark
2
broad histone mark
1
other context
1
other post-translational modification
Date released
182
June, 2019
48
November, 2017
9
November, 2018
4
August, 2017
3
October, 2019
1
March, 2019
1
November, 2020
1
October, 2017
Available data
2832
bam
2593
bigWig
1526
tsv
1283
bed narrowPeak
1077
fastq
838
bigBed narrowPeak
281
bed broadPeak
259
bigBed broadPeak
249
bed bed3+
tagAlign
161
txt
64
xls
35
bed bedMethyl
35
bigBed bedMethyl
18
bedpe bed3+
17
hic
12
bed bed3
8
csv
7
bed bedgraph
3
hdf5
3
tar
2
ibed
1
bedpe
1
vcf
Organism
249
Homo sapiens
Biosample type
173
tissue
47
cell line
28
primary cell
1
in vitro differentiated cells
Organ
78
kidney
51
liver
36
limb
35
brain
33
musculature of body
30
heart
20
epithelium
18
ureter
15
vasculature
blood vessel
9
connective tissue
9
pancreas
4
artery
4
eye
4
vein
2
adipose tissue
2
nerve
1
spleen
Project
249
AMP
Genome assembly (visualization)
234
GRCh38
226
hg19
Lab
247
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
Audit category:
2
inconsistent control read length
files.file_type!
tagAlign
lab.title!
Klaus Kaestner, Upenn
organ_slims!
blood vessel
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
249 results
search-icon
table-tab-icon
Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 37 more…
cell line
HepG2
46
Panc1
1
primary cell
cardiac fibroblast
3
skeletal muscle myoblast
1
2
astrocyte of the cerebellum
1
1
choroid plexus epithelial cell
1
1
glomerular visceral epithelial cell
2
+ See 15 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
Download