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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
199
DNase-seq
4
ChIP-seq
Assay category
199
DNA accessibility
4
DNA binding
Target of assay
transcription factor
9
RNA binding protein
8
histone
8
histone modification
5
chromatin remodeller
4
broad histone mark
narrow histone mark
1
other context
1
other post-translational modification
Date released
183
June, 2019
8
October, 2019
7
November, 2018
2
August, 2017
2
November, 2017
1
November, 2020
Available data
1899
bam
1698
bigWig
1183
tsv
777
bed narrowPeak
426
bigBed narrowPeak
388
fastq
227
bed broadPeak
225
bed bed3+
215
bigBed broadPeak
tagAlign
155
txt
73
zippedFastqFolder
64
xls
30
bed bedMethyl
30
bigBed bedMethyl
16
bedpe bed3+
16
hic
12
bed bed3
8
csv
7
bed bedgraph
4
hdf5
2
ibed
1
tar
1
vcf
Organism
203
Homo sapiens
Biosample type
170
tissue
30
primary cell
2
cell line
1
in vitro differentiated cells
Organ
78
kidney
36
limb
33
musculature of body
32
brain
30
heart
18
epithelium
18
ureter
13
vasculature
11
blood vessel
9
connective tissue
pancreas
7
liver
4
artery
4
eye
4
vein
2
adipose tissue
2
nerve
1
spleen
Project
203
AMP
Genome assembly (visualization)
200
GRCh38
182
hg19
Lab
203
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
files.file_type!
tagAlign
organ_slims!
pancreas
target.investigated_as!
narrow histone mark
transcription factor
BIOSAMPLE
ASSAY
203 results
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Clear Filters
DNase-seq
ChIP-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 37 more…
primary cell
endothelial cell of umbilical vein
2
2
cardiac fibroblast
3
glomerular visceral epithelial cell
2
kidney tubule cell
2
astrocyte of the cerebellum
1
+ See 18 more…
cell line
HepG2
2
in vitro differentiated cells
adipocyte
1
See all biosamples
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