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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
16
DNase-seq
2
ChIP-seq
Assay category
16
DNA accessibility
2
DNA binding
Target of assay
4
histone
4
histone modification
2
RNA binding protein
2
broad histone mark
narrow histone mark
transcription factor
Date released
14
June, 2019
4
October, 2019
Available data
259
bam
244
bigWig
225
fastq
tsv
94
bed narrowPeak
80
zippedFastqFolder
54
bigBed narrowPeak
19
bed bed3+
18
bed broadPeak
18
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
6
hic
5
bedpe bed3+
3
cool
3
tagAlign
2
hdf5
1
tar
Organism
18
Homo sapiens
Biosample type
18
primary cell
Organ
78
kidney
41
musculature of body
36
brain
36
limb
30
heart
18
epithelium
18
ureter
17
pancreas
13
liver
13
vasculature
11
blood vessel
9
connective tissue
4
artery
4
eye
4
vein
2
adipose tissue
2
nerve
1
spleen
Project
18
AMP
Genome assembly (visualization)
16
GRCh38
12
hg19
Lab
18
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
files.file_type!
tsv
target.investigated_as!
narrow histone mark
transcription factor
BIOSAMPLE
ASSAY
18 results
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DNase-seq
ChIP-seq
primary cell
endothelial cell of umbilical vein
2
2
glomerular visceral epithelial cell
2
kidney tubule cell
2
brain microvascular endothelial cell
1
choroid plexus epithelial cell
1
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