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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
371
ChIP-seq
23
ATAC-seq
2
DNase-seq
Assay category
371
DNA binding
25
DNA accessibility
Target of assay
285
transcription factor
83
histone modification
82
histone
66
recombinant protein
52
narrow histone mark
37
RNA binding protein
30
broad histone mark
18
chromatin remodeller
2
other context
2
other post-translational modification
Date released
255
November, 2017
November, 2018
50
December, 2017
27
May, 2020
20
May, 2022
18
August, 2017
17
August, 2021
6
October, 2019
2
June, 2019
1
February, 2021
Available data
628
bam
570
bigWig
412
fastq
390
bed narrowPeak
307
bigBed narrowPeak
174
tsv
86
tagAlign
60
bed broadPeak
60
bigBed broadPeak
10
bed bed3+
3
tar
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
396
Homo sapiens
Biosample type
270
cell line
106
tissue
14
in vitro differentiated cells
6
primary cell
Organ
396
liver
213
pancreas
201
brain
191
heart
183
kidney
153
epithelium
135
vasculature
131
blood vessel
92
limb
74
artery
74
connective tissue
60
musculature of body
42
blood
42
bodily fluid
33
eye
27
nerve
18
ureter
15
vein
14
embryo
12
adipose tissue
10
spleen
8
bone element
8
skeleton
1
pituitary gland
Project
396
AMP
Genome assembly (visualization)
394
hg19
316
GRCh38
Lab
362
AMP-T2D consortium
20
Karen Mohlke, UNC
14
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
10
missing controlled_by
Audit category:
22
inconsistent control read length
4
inconsistent control run_type
month_released!
November, 2018
BIOSAMPLE
ASSAY
396 results
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ChIP-seq
ATAC-seq
DNase-seq
cell line
HepG2
269
1
tissue
liver
78
20
right lobe of liver
7
1
in vitro differentiated cells
hepatocyte
14
primary cell
hepatocyte
3
1
Liver fetal (hepatocyte)
1
hepatic stellate cell
1
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