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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
46
ChIP-seq
2
ATAC-seq
2
DNase-seq
1
Hi-C
Assay category
46
DNA binding
4
DNA accessibility
1
3D chromatin structure
Target of assay
histone
53
histone modification
46
transcription factor
32
broad histone mark
21
narrow histone mark
6
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
44
November, 2017
4
August, 2017
2
March, 2019
1
October, 2017
Available data
2531
bam
2245
bigWig
1574
tsv
1118
fastq
931
bed narrowPeak
615
bigBed narrowPeak
222
bed broadPeak
220
bigBed broadPeak
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
58
tagAlign
34
bed bedMethyl
34
bigBed bedMethyl
23
bedpe bed3+
23
hic
11
bed bed3
8
csv
7
bed bedgraph
4
tar
3
cool
2
hdf5
2
ibed
1
bedpe
1
vcf
Organism
51
Homo sapiens
Biosample type
44
cell line
3
primary cell
3
tissue
1
in vitro differentiated cells
Organ
44
liver
brain
3
pancreas
2
epithelium
2
vasculature
1
blood vessel
1
connective tissue
Project
51
AMP
Genome assembly (visualization)
50
hg19
35
GRCh38
Lab
48
AMP-T2D consortium
1
Bing Ren, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
2
inconsistent control read length
files.file_type!
bed bed3+
organ_slims!
brain
target.investigated_as!
histone
BIOSAMPLE
ASSAY
51 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
Hi-C
cell line
HepG2
44
primary cell
skeletal muscle myoblast
2
1
tissue
islet of Langerhans
2
1
in vitro differentiated cells
adipocyte
1
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