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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
21
DNase-seq
6
ChIP-seq
6
Hi-C
Assay category
21
DNA accessibility
6
3D chromatin structure
6
DNA binding
Target of assay
4
histone
4
histone modification
2
RNA binding protein
2
broad histone mark
2
narrow histone mark
2
transcription factor
Date released
17
June, 2019
6
October, 2019
4
November, 2017
3
October, 2022
2
March, 2020
1
November, 2019
Available data
471
bam
428
bigWig
263
bed narrowPeak
257
fastq
223
tsv
138
bigBed narrowPeak
80
zippedFastqFolder
27
bed broadPeak
27
bigBed broadPeak
26
bed bed3+
13
tagAlign
7
bed bedMethyl
7
bigBed bedMethyl
7
hic
6
bedpe bed3+
3
cool
2
hdf5
1
tar
Organism
33
Homo sapiens
Biosample type
26
primary cell
6
tissue
1
cell line
Organ
78
kidney
65
liver
48
musculature of body
47
brain
36
limb
33
heart
28
pancreas
27
epithelium
19
vasculature
18
ureter
15
blood vessel
11
connective tissue
5
vein
4
adipose tissue
4
artery
4
eye
2
nerve
1
spleen
Project
30
AMP
3
HPAP
Genome assembly (visualization)
27
hg19
25
GRCh38
Lab
30
AMP-T2D consortium
3
Klaus Kaestner, Upenn
Audit category:
3
audit script error
2
inconsistent ontology term
BIOSAMPLE
ASSAY
33 results
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DNase-seq
ChIP-seq
Hi-C
primary cell
endothelial cell of umbilical vein
2
2
1
brain microvascular endothelial cell
1
2
choroid plexus epithelial cell
1
2
glomerular visceral epithelial cell
2
kidney tubule cell
2
+ See 11 more…
tissue
coronary artery
2
tibial artery
2
aorta
1
ascending aorta
1
cell line
EndoC_BH1
1
See all biosamples
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