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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
21
ChIP-seq
18
RRBS
1
ATAC-seq
Assay category
21
DNA binding
18
DNA methylation
1
DNA accessibility
Target of assay
21
histone
21
histone modification
12
broad histone mark
9
narrow histone mark
Date released
24
August, 2017
14
July, 2019
1
November, 2017
1
October, 2017
Available data
bam
3014
bigWig
1684
bed narrowPeak
1532
tsv
1352
fastq
959
bigBed narrowPeak
392
tagAlign
305
bed broadPeak
268
bigBed broadPeak
260
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
34
bed bedMethyl
34
bigBed bedMethyl
21
bedpe bed3+
20
hic
12
bed bed3
8
csv
7
bed bedgraph
3
cool
3
hdf5
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
40
Homo sapiens
Biosample type
31
tissue
9
primary cell
Organ
16
musculature of body
9
pancreas
6
epithelium
4
kidney
3
brain
2
connective tissue
2
heart
2
liver
1
adipose tissue
1
eye
1
pericardium
vasculature
Project
40
AMP
Genome assembly (visualization)
40
hg19
1
GRCh38
Lab
39
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
2
inconsistent ontology term
files.file_type!
bam
organ_slims!
vasculature
BIOSAMPLE
ASSAY
40 results
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Clear Filters
ChIP-seq
RRBS
ATAC-seq
tissue
skeletal muscle tissue
13
2
islet of Langerhans
6
1
1
brain
1
cingulate gyrus
1
heart left ventricle
1
+ See 5 more…
primary cell
cardiac fibroblast
1
cardiac muscle cell
1
epithelial cell of proximal tubule
1
hepatocyte
1
kidney epithelial cell
1
+ See 4 more…
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