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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
58
ChIP-seq
4
DNase-seq
1
RRBS
1
WGBS
Assay category
58
DNA binding
4
DNA accessibility
2
DNA methylation
Target of assay
44
transcription factor
14
histone
14
histone modification
8
broad histone mark
6
narrow histone mark
4
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
58
November, 2017
4
November, 2018
1
August, 2017
1
June, 2019
Available data
655
bam
598
bigWig
450
fastq
422
bed narrowPeak
343
bigBed narrowPeak
169
tsv
82
tagAlign
62
bed broadPeak
62
bigBed broadPeak
8
bed bed3+
3
tar
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
bed bed3
1
csv
1
vcf
Organism
64
Homo sapiens
Biosample type
59
cell line
4
tissue
1
primary cell
Organ
82
kidney
66
liver
50
musculature of body
49
brain
38
heart
37
limb
epithelium
27
pancreas
19
vasculature
18
ureter
14
blood vessel
13
connective tissue
5
adipose tissue
5
eye
4
artery
4
vein
3
spleen
2
nerve
1
pericardium
Project
64
AMP
Genome assembly (visualization)
63
hg19
49
GRCh38
Lab
64
AMP-T2D consortium
Audit category:
13
inconsistent control read length
month_released!
September, 2018
organ_slims!
epithelium
BIOSAMPLE
ASSAY
64 results
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ChIP-seq
DNase-seq
RRBS
WGBS
cell line
HepG2
58
1
tissue
liver
2
1
right lobe of liver
1
primary cell
hepatic stellate cell
1
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