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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
DNase-seq
22
ChIP-seq
4
Hi-C
Assay category
190
DNA accessibility
22
DNA binding
4
3D chromatin structure
Target of assay
22
histone
22
histone modification
12
broad histone mark
10
narrow histone mark
Date released
183
June, 2019
14
August, 2017
8
October, 2019
6
November, 2017
4
July, 2019
1
November, 2020
Available data
2703
bam
2546
bigWig
1603
bed narrowPeak
1183
tsv
951
bigBed narrowPeak
fastq
379
tagAlign
301
bed broadPeak
278
bigBed broadPeak
244
bed bed3+
155
txt
73
zippedFastqFolder
64
xls
30
bed bedMethyl
30
bigBed bedMethyl
16
bedpe bed3+
16
hic
12
bed bed3
8
csv
7
bed bedgraph
4
hdf5
4
tar
2
ibed
1
tagAlign bed3+
1
vcf
Organism
216
Homo sapiens
Biosample type
183
tissue
33
primary cell
Organ
78
kidney
46
musculature of body
39
brain
36
limb
30
heart
20
epithelium
18
ureter
15
vasculature
13
blood vessel
pancreas
9
connective tissue
4
artery
4
eye
4
vein
3
liver
2
adipose tissue
2
nerve
Project
216
AMP
Genome assembly (visualization)
195
GRCh38
195
hg19
Lab
216
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
files.file_type!
fastq
organ_slims!
pancreas
BIOSAMPLE
ASSAY
216 results
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DNase-seq
ChIP-seq
Hi-C
tissue
heart
18
muscle of arm
17
kidney
13
muscle of leg
13
skeletal muscle tissue
13
+ See 39 more…
primary cell
endothelial cell of umbilical vein
2
2
cardiac fibroblast
3
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
brain pericyte
1
1
+ See 18 more…
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