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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
169
total RNA-seq
58
ChIP-seq
5
DNase-seq
3
small RNA-seq
2
Hi-C
2
pCHi-C
Assay category
172
Transcription
58
DNA binding
5
DNA accessibility
2
3D chromatin structure
Target of assay
44
transcription factor
14
histone
14
histone modification
8
broad histone mark
6
narrow histone mark
4
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
144
May, 2020
58
November, 2017
10
August, 2021
7
July, 2019
5
December, 2019
5
January, 2019
3
March, 2020
3
November, 2018
2
June, 2019
1
February, 2020
1
October, 2019
Available data
681
bam
622
bigWig
465
fastq
441
bed narrowPeak
358
bigBed narrowPeak
174
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
239
Homo sapiens
Biosample type
158
tissue
74
cell line
7
primary cell
Organ
488
connective tissue
445
pancreas
404
adipose tissue
239
liver
201
heart
184
epithelium
103
kidney
88
vasculature
84
blood vessel
73
brain
62
artery
58
bone element
57
musculature of body
43
limb
18
ureter
14
embryo
9
eye
7
nerve
6
vein
2
intestine
2
spleen
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
239
AMP
Genome assembly (visualization)
227
hg19
211
GRCh38
Lab
229
AMP-T2D consortium
10
Bing Ren, UCSD
Audit category:
13
inconsistent control read length
BIOSAMPLE
ASSAY
239 results
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total RNA-seq
ChIP-seq
DNase-seq
small RNA-seq
Hi-C
pCHi-C
tissue
liver
147
2
1
1
1
right lobe of liver
3
1
2
cell line
HepG2
14
58
1
1
primary cell
hepatocyte
5
1
hepatic stellate cell
1
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